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  • 5.29_update
  • 5.31_update
  • BIOWDL-208
  • BIOWDL-213
  • BIOWDL-216
  • BIOWDL-232
  • BIOWDL-245
  • BIOWDL-247
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  • v5.2.0
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  • phhv1reassembly
  • phhv1assembly
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Created with Raphaël 2.2.07Apr632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul292827261918171615121110983Update runtime.Update CHANGELOG.Replace mv command with cp.put requirements as defaultsBIOWDL-442 QCreqsBIOWDL-442 QCreqsput requirements as defaultstime_minutesadd time_minutes part IImove estimates to runtime sectionadd time_minutes part Iupdate CHANGELOGaddSmooveaddSmooveadd smoove.wdlruntime_minutes -> time_minutesrename time parameterestimate cutadapt memory and runtimemake estimates overrideableAdd fastqc requirementsadd runtime_minutes and adjust memory of star index taskUpdate _config.ymlgh-pagesgh-pagesupdate changelogadd task for STAR index generationsetting next versionstable changelogv3.1.0v3.1.0forgotten backslashMerge pull request #205 from biowdl/BIOWDL-423Update bwa.wdlBIOWDL-423BIOWDL-423Merge branch 'develop' into BIOWDL-423Merge pull request #204 from biowdl/BIOWDL-390update parameter_metaupdate bwa kit defaultsUpdate parameter_meta.BIOWDL-390BIOWDL-390Add missing output to parameter_meta.Merge pull request #203 from biowdl/BIOWDL-390Remove outputPrefix variable from output section.Make sure stderr log file from Refine is unique and not overwritten.Merge pull request #202 from biowdl/BIOWDL-390Separate additions to isoseq3 into two lines.Update parameter_meta.Update output names.Fix --min-polya-length argument syntax & add workaround for glob command not locating files in output directory.Merge pull request #201 from biowdl/BIOWDL-390