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Created with Raphaël 2.2.06Oct52129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928Update CHANGELOG.mdfix whitespaceMake sure the bam and pbi files are in the same foldersimplify-limasimplify-limaSimplify the lima task output structurefix bcftools filterUpdate ChangelogAdd parameter meta for threadstypoadd snpeff taskMerge remote-tracking branch 'origin/develop' into sageMerge pull request #251 from biowdl/BIOWDL-516Change indexing.BIOWDL-516BIOWDL-516Remove metrics file.Merge pull request #250 from biowdl/BIOWDL-499Merge branch 'BIOWDL-499' of https://github.com/biowdl/tasks into BIOWDL-499Make some outputs optional.Merge branch 'develop' into BIOWDL-499Merge pull request #249 from biowdl/BIOWDL-512Fix.Merge branch 'develop' into BIOWDL-499Merge develop.Complete parameter_meta.Merge branch 'develop' into BIOWDL-512Merge pull request #247 from biowdl/optional-indexingUpdate CHANGELOG.mdMerge branch 'develop' into BIOWDL-499Update changelog.Add NanoQC and NanoPlot.Update CHANGELOG.BIOWDL-512BIOWDL-512Add timeMinutes to Classify.fix paramter_metafix paramter_metachange bai to bamIndex in sagechange default outputPath of sagefix sage...Merge branch 'sage' of https://github.com/biowdl/tasks into sageupdate sageMerge branch 'develop' into sageadd paramter meta compressionLevelMerge branch 'develop' of https://github.com/biowdl/tasks into optional-indexing