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Created with Raphaël 2.2.010Jan987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov2726232221add parameter_meta to samtoolsadd parameter_meta to multiqcupdate scriptsadd parameter_meta to MarkDuplicates and MergeVCFstypoadd parameter_meta for SplitNCigarReads, ReorderGlobbedScatter and ScatterRegionsMerge pull request #168 from biowdl/BIOWDL-379add parameter_meta to CombineGVCFs, GatherBqsrReports, GenotypeGVCFs and HaplotypeCallerGvcftyposadd parameter_meta to BaseRecibratoradd parameter_meta to ApplyBQSR, GatherBamFiles and GatherVcfFilesupdate scriptsmodify collect-columns parameter_metatypotypoadd parameter_meta to picard metricsUpdate CHANGELOG.BIOWDL-379BIOWDL-379Fix SQLite error concerning database/disk space being full.Merge pull request #167 from biowdl/update_htsequpdate changelogupdate htseq versionadd ploidy to haplotypecallerBIOWDL-377BIOWDL-377make complement simpler by using fasta indexadd commentadd task to merge multiple bedsconsistent namingfix miniwdl check, more consistent namingadd parameter_metaadd complement taskadded get chromsizes taskmake intervals optional, allow exclude intervalsMerge pull request #166 from biowdl/BIOWDL-371Add backslash.Add space to talon config file flag.Update config file flag.Update parameter_meta for TALON task to include config file.Add config file to output for debug purposes.Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-371Merge pull request #165 from biowdl/update_scriptsupdate changelog, remove unused inputs from cutadapt