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biowdl
tasks
Graph
d230e3ff252184807990af97ad61c3e1adddeb5b
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Branches
20
5.29_update
5.31_update
BIOWDL-208
BIOWDL-213
BIOWDL-216
BIOWDL-232
BIOWDL-245
BIOWDL-247
BIOWDL-253
BIOWDL-258
BIOWDL-259
BIOWDL-261
BIOWDL-265
BIOWDL-269
BIOWDL-271
BIOWDL-279
BIOWDL-282
BIOWDL-292
BIOWDL-297
BIOWDL-298
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17
v5.2.0
v5.1.0
v5.0.1
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phhv1reassembly
phhv1assembly
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Created with Raphaël 2.2.0
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Merge branch 'develop' into BIOWDL-199
Merge pull request #89 from biowdl/BIOWDL-194
remove redundant precommand stuff
Merge branch 'develop' into BIOWDL-194
Merge pull request #91 from biowdl/BIOWDL-200
tabix uses its own container
create the output dir
make sure scatters work correctly
add hisat2 task
fix gatk images
fix a few things in biopet
fix order
scatterdir is a file
make scatterregions work in container
correct name
add tags to all samtools stuff
dockerize scatterregions
run python script in container
add docker containers to gatk
Merge pull request #90 from biowdl/BIOWDL-198
add multicontainers
fix typo
remove redundant inputs
enable containers for picard
change docker tags
add docker containers for htseq and stringtie, escape $ in mergecounts
allow for additional annotations to be added into mergecounts output
add outFilterMatchNmin option to star
SASC-835
SASC-835
Merge pull request #88 from biowdl/BIOWDL-192
add docker for extract adapters, catadapt and fastqc
Merge pull request #87 from biowdl/BIOWDL-178
remove import from simple task
Merge pull request #86 from biowdl/add_docker
add docker to other samtools tasks
add docker runtime for star and samtools index
Merge pull request #85 from biowdl/PYT-8
use files not string
fix file
fix dbsnparg
fix reference fasta
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