Skip to content
Snippets Groups Projects

Repository graph

You can move around the graph by using the arrow keys.
Select Git revision
  • 5.29_update
  • 5.31_update
  • BIOWDL-208
  • BIOWDL-213
  • BIOWDL-216
  • BIOWDL-232
  • BIOWDL-245
  • BIOWDL-247
  • BIOWDL-253
  • BIOWDL-258
  • BIOWDL-259
  • BIOWDL-261
  • BIOWDL-265
  • BIOWDL-269
  • BIOWDL-271
  • BIOWDL-279
  • BIOWDL-282
  • BIOWDL-292
  • BIOWDL-297
  • BIOWDL-298
  • v5.2.0
  • v5.1.0
  • v5.0.1
  • v5.0.0
  • v4.0.0
  • v3.1.0
  • v3.0.0
  • v2.1.0
  • v2.0.0
  • v1.0.0
  • v1.0
  • v0.3
  • v0.1.1
  • v0.2
  • v0.1
  • phhv1reassembly
  • phhv1assembly
37 results
Created with Raphaël 2.2.09Feb28Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716Add lint-evnironmentUse mamba env updateUse cacheAdd missing done statementMerge branch 'develop' into BIOWDL-583Implement all checks in lint.yml directlyUse a separate lint fileadd missing parameter_metaMerge pull request #298 from biowdl/sageupdate healthcheckeradress commentsupdate scripts and changelogMerge remote-tracking branch 'origin/develop' into sageincrease resources GRIDSSHave more records in ramaddPicardDedupaddPicardDedupAdd option to assume sort orderUpdate Picard and reevaluate use of intel inflater/defalerSet xmx value properly for UmiAwareMarkDuplicatesWithMateCigarUse proper encodingUse set_tag call from pysamAdd format parameter to macs2Use more conventional list unpacking for clarityUpdate changelogCorrect output filesAlso create directoriesDedent overindented codeAdd umiTagName flagAdd script to extract umi from read nameAllow multiple bam inputsMake sure task is consistentupdate changelogsamtoolsAddOpti…samtoolsAddOptionalIndexFileAsInputMerge branch 'develop' into samtoolsAddOptionalIndexFileAsInputadd annotateBamWithUmiadd umiAwareMarkDuplicateUse mamba-forge and mamba to install dependenciesMerge pull request #295 from biowdl/BIOWDL-576More correct evaluation of controlBams inputUpdate changelogAdd time minutes parameterAdd parameter_meta for macs2