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Created with Raphaël 2.2.04Jun29May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714remove more structsdestroy another structdestroy another structdestroy structssimplify furthersimplifyfix tabixfix tabixrewrite tabixindex in the merge stepsome additionsmake samtools suitable for containersmake sure dir existscheck with bash containerMerge pull request #109 from biowdl/md5sumsMerge branch 'develop' into md5sumsmd5sumsmd5sumsstyleadd bedtools sortbetter commandcreate output dirsfix some referencesadd indexescapitalswiseguy completeMerge branch 'SVs' of https://github.com/biowdl/tasks into SVsincreased fastqsplitter memory multiplier to 7md5sums should be Strings not Filesstart on wiseguyadd year to licenseMerge pull request #108 from biowdl/BIOWDL-232increase memory multiplierincrease memory for vcfBIOWDL-232BIOWDL-232higher memory multiplier for fastqsplitterMerge pull request #107 from biowdl/BIOWDL-232fix logic and formattingcorrectifynewer version of cutadaptallow for single adapter and contaminations input in cutadaptMerge pull request #106 from biowdl/BIOWDL-232correct outputs