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  • 5.29_update
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Created with Raphaël 2.2.011Aug85229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul28272322212017start adding lilacmake purple's somaticRainfallPlot output optionalchanges for WGSinCancerDiagnosticsupdate pave parameter_metaMerge remote-tracking branch 'origin/develop' into 5.29_updateMerge pull request #304 from biowdl/performanceupdate changelogMerge branch 'develop' into performanceincrease time for cobaltadjust purple commandadd more optinal inputs to Pavestart adjusting pave commandstart adjusting pave commandMerge remote-tracking branch 'origin' into 5.29_updateMerge pull request #303 from biowdl/sageupdate some tool versionsfix linting issuesagesageupdate changelogMerge branch 'develop' into sagefix typo in star GenomeGenerate parameter_metaMerge pull request #302 from biowdl/gridss_annotateMerge branch 'develop' into gridss_annotateAdd GT to gridss results in AnnotateSvTypesMerge pull request #301 from biowdl/gridss_annotateupdate changelogincrease memory for bcftools sortgive bcftools sort more timefix duoble .bgz and and index to outputdetect if compressedfix output namefix heredocincrease sage memoryperformanceperformanceadjust sage memory and timeadjust some runtime settingsadjust gridss threadsMake sure reportPath directory is createdvariousfixesvariousfixestypocopy paste erroradd task for sv type annotation of gridss resultsMerge pull request #300 from biowdl/fix_gridss_tbi