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Created with Raphaël 2.2.026Mar252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127JunMerge pull request #205 from biowdl/BIOWDL-423Update bwa.wdlBIOWDL-423BIOWDL-423Merge branch 'develop' into BIOWDL-423Merge pull request #204 from biowdl/BIOWDL-390update parameter_metaupdate bwa kit defaultsUpdate parameter_meta.BIOWDL-390BIOWDL-390Add missing output to parameter_meta.Merge pull request #203 from biowdl/BIOWDL-390Remove outputPrefix variable from output section.Make sure stderr log file from Refine is unique and not overwritten.Merge pull request #202 from biowdl/BIOWDL-390Separate additions to isoseq3 into two lines.Update parameter_meta.Update output names.Fix --min-polya-length argument syntax & add workaround for glob command not locating files in output directory.Merge pull request #201 from biowdl/BIOWDL-390Add workaround for glob command in lima.Update lima to correctly collect bam files.Merge pull request #200 from biowdl/BIOWDL-390Update CHANGELOG.Add missing backslash.remove unused includeHeaderrename outputBAM back to outputBam, remove booleanMerge pull request #199 from biowdl/resourceRequirementsMerge branch 'develop' into resourceRequirementsMerge pull request #197 from biowdl/add_UMI_separatorupdate changelogresourceRequire…resourceRequirementsupdate default fastqc container since it fixes several bugsdocs for compressionLeveluse more cores for cutadapt, update cutadapt version, explicitly set low compression levelmore threads for BWA by defaultUpdate umi-tools.wdladd_UMI_separatoradd_UMI_separatorUpdate CHANGELOG.mdMerge branch 'develop' into add_UMI_separatorsetting next versionupdate version in VERSION and CHANGELOG.mdv3.0.0 release_…v3.0.0 release_v3.0.0update scriptsMerge branch 'add_UMI_separator' of https://github.com/biowdl/tasks into add_UMI_separatorupdate CHANGELOG