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Created with Raphaël 2.2.018Apr17161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654import common.wdlinsert filePaths inside survivorchnged indentation line 29changed outputPathremoved import common.wdlmoved each option to its own linemoved each option to its own lineadded outputDiradded RenameSample taskchanged output stringfixed struct indexingadd germline taskadd bcftools, clever, delly, lumpy, survivormake featureAttribute optional in collect-columnsadd collect-columnsMerge pull request #103 from biowdl/small_fixesreduce memory for GetConfigurationsmall fixesMerge pull request #102 from biowdl/BIOWDL-213Merge remote-tracking branch 'origin/develop' into BIOWDL-213Added tasks for sv-workflowsv-callingsv-callingMerge pull request #101 from biowdl/fix_vardict_threadsfix container stringBIOWDL-213BIOWDL-213remove linkingadd dockerTagcorrect the versionadd threads input for vardictfix_vardict_thr…fix_vardict_threadssimplify and containerize bwacontainers_germ…containers_germline_dnafix missing values of additional attributes in mergecountsfix_mergecountsfix_mergecountsMerge pull request #100 from biowdl/bamBasedScatterMerge branch 'develop' into bamBasedScatteradd bamIndex input for scatterregionsadd missing spaceadd bamFile input to scatterregionsfix missing additional attributesBIOWDL-216BIOWDL-216fix issues with stringtiev0.1.1 v0.1_hot…v0.1.1 v0.1_hotfixMerge pull request #99 from biowdl/add_copymemory adjustmentsadd_copyadd_copyR locale workaroundadd copy task