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Created with Raphaël 2.2.029Aug28272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654329Mar2120191615141312986126Feb22219831Jan3029191817Fixed empty readgroup argfixing structMerge branch 'develop' into BIOWDL-88Fixed defaultsMerge pull request #56 from biowdl/BIOWDL-88Merge branch 'develop' into BIOWDL-88Switch to structMerge pull request #54 from biowdl/BIOWDL-82Added sort orderFixing sort argumentsFormatSwitch order of toolsFix tool nameRemoving duplicate commandusing snapshot in travisWIPAdded asMerge branch 'develop' into BIOWDL-82Added importFixing string concatsFixing syntaxAdd picard step to correct tagsadd somaticseq and add precommands to strelka/manta runMerge pull request #55 from biowdl/BIOWDL-83fix BedToIntervalListFixed commandMerge branch 'develop' into BIOWDL-83add BedTOIntervalListMerge branch 'develop' into BIOWDL-82Added alt post scriptMerge pull request #53 from biowdl/BIOWDL-39Merge branch 'develop' into BIOWDL-39give validated files as outputremove defaults, these things should be specifiedSwitch to structsMerge pull request #52 from biowdl/BIOWDL-57Added mroe structsMerge pull request #51 from biowdl/BIOWDL-6Merge branch 'develop' into BIOWDL-6Fixing read_lines
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