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Created with Raphaël 2.2.023Jan161325Nov151410987428Oct262524211411723Sep1226Aug25232219181185229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug242019181714131211add memory runtime attribute to tabix taskMerge pull request #310 from biowdl/BIOWDL-602Merge branch 'develop' into BIOWDL-602Use latest version of scriptsUpdate changelog with samtools changeAdd parameter_meta for targetFileupdate samtools containersBIOWDL-602BIOWDL-602Add targets file input to samtools viewincrease memory for amberMerge pull request #309 from biowdl/miniwdlMerge branch 'develop' into miniwdlincrease time for AmberMerge pull request #308 from biowdl/gridssadjusted runtime attributes for clever tasksupdate changelogfix issue where fastp errors if split is set to 1fix typing issue in AnnotateSvTypes R codegridssgridssremove second breakends in gridss AnnotateSvTypes scriptFallback to copying when hardlinking does not workUpdate time requirementsKG-667KG-667Add memory requirement for tabixAdd runtime requirements for UPDioSpecify WDL version for Updio fileAdd an output for all filesEnable disabling of annotationsGive defaults for outputPathAdd updio multisample taskStart on updio taskMerge pull request #307 from biowdl/biowdl-595typoMerge branch 'develop' into biowdl-595Add @DavyCats' suggestionsMerge pull request #306 from biowdl/BIOWDL-589Add time_minutes dockerimage and update parameter_metaBIOWDL-589BIOWDL-589Use samtools dict instead of Picard CreateSequenceDictionaryAdd indexing tasks to the changelogMake index use the basename of the fileUse the basename of the input file for index namesMake sure index task worksCopy reference to prevent problems