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Created with Raphaël 2.2.024Jun232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312Make sure samtools uses memoryPut sorting back into bwakit taskRevert "Don't sort"use newer more experimental imageuse correct memory estimateremove other sorting bitsUpdate samtools sort to also indexDon't sortDo not use unnecessary threadsUpdate changelog for pbmm2pbmm2pbmm2Add pbmm2, the PacBio wrapper for minimap2Merge pull request #224 from biowdl/chunkedscatterUpdate parameter_metachunkedscatterchunkedscatterUpdate changelogUpdate image and tasks for chunk scatterMerge pull request #223 from biowdl/BIOWDL-471Remove memoryGb from the input sectionadd javaxmx parameter_metaMerge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471Update changelogupdate gatk varianteval timesAdd scatter-regions to changelogMerge branch 'develop' into BIOWDL-471resource requirements for multiqcMerge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471Also read reference and dbsnpvcf as part of time estimate300 minutes per G of inputuse the same prefix as the biopet-scatterregions tooltypoAdd scatter-regions taskMerge pull request #222 from biowdl/BIOWDL-474Fix command section now that new inputs are optional.Change new options to optional.Update CHANGELOG.Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-474Add new STAR options.Merge pull request #221 from biowdl/BIOWDL-472Trigger travis test.Update minimumIdentity to correct type and default.Fix error in star