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Created with Raphaël 2.2.08Jan731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654329Mar2120191615141312986126Feb22219831JanMerge pull request #85 from biowdl/PYT-8use files not stringfix filefix dbsnpargfix reference fastarewrite argumentproper filechange bamstats generate into filegenome dir should be a fileremove faulty validated fastqfix directory creationMerge pull request #84 from biowdl/BIOWDL-164add -e flag to stringtieMerge pull request #83 from biowdl/BIOWDL-164missing backslashadd stringtie mergeAdd bedtools bamtobed commandbedtoolsbedtoolsMerge pull request #82 from biowdl/SASC-844Merge branch 'develop' into SASC-844Merge pull request #81 from biowdl/fix_star_unmappedmore memory for htseqhigher memory for htseqcountsaner defaults for starMerge branch 'develop' into fix_star_unmappedadd outSAMunmapped to starMerge pull request #80 from biowdl/samtoolsMAPQMerge branch 'develop' into samtoolsMAPQAdd argument for filtering on MAPQ (alignment quality) for View tasknew structureMerge pull request #79 from biowdl/fix-fr-option-stringtieUpdate stringtie.wdlMerge pull request #78 from biowdl/macs2BiocontainerRun macs2 from dockerMerge remote-tracking branch 'origin/develop' into developSetting version to 0.3-SNAPSHOTSetting version to 0.2v0.2v0.2Merge pull request #77 from biowdl/BIOWDL-139update YamlToJson to workadd yamltojson taskMerge pull request #76 from biowdl/v0_1_docs
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