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  • 5.29_update
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  • BIOWDL-208
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  • phhv1reassembly
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Created with Raphaël 2.2.011Aug1076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12update CHANGELOGMerge branch 'develop' into gridssMerge remote-tracking branch 'remotes/origin/develop' into BIOWDL-488Merge pull request #239 from biowdl/BIOWDL-487Remove uncompressed output options.Increase time estimate for combining GVCFsfixjointgenotyp…fixjointgenotypingRemove left-over chmod.Add missingAdd index input to the tasks.Correct output naming.Add pacbio bam2fastx tool.Merge branch 'develop' into optional-interval-GenotypeGVCFsoptional-interv…optional-interval-GenotypeGVCFsadd missing category for outputType in bcftools viewOptional is not a valid category for our docs templateUpdate CHANGELOG.md to new versionAdd task for whatshap phasewhatshapwhatshapMerge branch 'develop' into optional-interval-GenotypeGVCFsUpdate changelogUpdate parameter metaMake intervals optional for GenotypeGVCFssetting next versionset version in changelog to stable versionv4.0.0v4.0.0update scriptsfix parameter_metaadd parameter_meta to gridssupdate changelogMerge remote-tracking branch 'origin/develop' into gridssMerge pull request #235 from biowdl/KG-549update changelogKG-549KG-549Update default cutadapt imageslightly tune memory requirementsBIOWDL-488BIOWDL-488add gridss taskSet compression level to 1 and higher time estimate for mergevcf taskuse mulled biocontainerupdate changelogUpdate imageAdd bwa-mem2 taskAdd comments on commentsEnable/disable postalt with commentCombine BWA and BW kit tasks