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Created with Raphaël 2.2.026Oct2216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb242013121110765add missing inputtypofix missing key in parameter_metadd license notice to snpeff, add index input for bcftools annotate, and BWA mem index image input for gridss annotate inserted sequencesadd some missing inputs to gridss AnnotateInsertedSequence and add missing \ to bcftools Filteradd some # !UnknownRuntimeKeyadd AnnotateInsertedSequence task to gridss.wdlAdd memory to samtools Mergeadd gripss, timeMinutes for gridss, fix typosMerge branch 'develop' into Pacbio-variantcallingRename parameter meta for indexMerge pull request #252 from biowdl/bugfixRemove most inputsremove redundant G in -Xmx in snpeffMerge branch 'develop' into bugfixbugfixbugfixMerge branch 'develop' into Pacbio-variantcallingMerge pull request #257 from biowdl/bcftools_add_tmpadd tmpDir to parameter_meta sectionadd tmpDir input to specify temporary directory when sorting.Update CHANGELOG.mdMerge pull request #256 from biowdl/optional-indexingMerge branch 'develop' into optional-indexingoptional-indexingoptional-indexingupdate CHANGELOGremove outputType and indexing instead based on extension of the fileAdd parameter meta for CollectHsMetricsUpdate parameter metaUpdate picard.wdlUpdate CHANGELOG.mdUpdate CHANGELOG.mdUpdate CHANGELOG.mdUpdate CHANGELOG.mdMerge pull request #253 from biowdl/BIOWDL-499Update changelogAdd whatshap tasksAdd deepvariant tasksAdd HsMetrics and VariantcallingMetrics to picardIncrease runtime and add sample name for pbmm2Make intervals optional for gatk GenotypeGVCFsAdd task for indexing PacBio bam filesSimplify lima output structure