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Created with Raphaël 2.2.03Nov230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb242013121110Update bwa.wdl.Update lima to match isoseq3 and ccs changes.Add last set of updates.Update layout samtools.wdl.Add another batch of updated tasks.Address travis error.Add another batch of updates.Fix a third Travis error.Fix second task as well.BIOWDL-499BIOWDL-499Try to fix Travis error.Edit another batch of tasks to uniform layout.Update first set of tasks to uniform layout.Merge pull request #260 from biowdl/deepvariantFix bug in whatshap taskUpdate parameter metaAdd postprocess argument to DeepVariant taskMerge pull request #259 from biowdl/samtoolsUpdate parameter metaMerge pull request #258 from biowdl/ccs5Update parameter metaccs5ccs5Remove duplicate parameter metaUpdate changelogUpdate to CCS version 5Merge pull request #254 from biowdl/Pacbio-variantcallingUpdate CHANGELOG.mdPacbio-variantc…Pacbio-variantcallingRemove duplicate parameter meta entryMerge branch 'Pacbio-variantcalling' of https://github.com/biowdl/tasks into Pacbio-variantcallingAdd support for outputPrefix with or without folderUpdate pbbam.wdladd some cleanup to snpeffadd missing inputsadd missing inputtypofix missing key in parameter_metadd license notice to snpeff, add index input for bcftools annotate, and BWA mem index image input for gridss annotate inserted sequencesadd some missing inputs to gridss AnnotateInsertedSequence and add missing \ to bcftools Filteradd some # !UnknownRuntimeKeyadd AnnotateInsertedSequence task to gridss.wdlAdd memory to samtools Mergeadd gripss, timeMinutes for gridss, fix typos