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Created with Raphaël 2.2.027Jan26252423161325Nov151410987428Oct262524211411723Sep1226Aug25232219181185229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug24201918171413Update CHANGELOG.mdfix_arg_spacefix_arg_spaceAdd space between flag and the value followingMerge remote-tracking branch 'origin/develop' into somaticSvadd missing paramter_metaMerge pull request #313 from biowdl/macs2_flagsUpdate CHANGELOG.mdUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlUpdate macs2.wdlDelete calculation for shiftsizeAddress comments from Rubenmacs2_flagsmacs2_flagsFix data type errorAdd a number of macs2 flags so we can adhere to EncodeMerge branch 'develop' into somaticSvfix lint issuesadd various tasks for somatic SV callingadd memory runtime attribute to tabix taskMerge pull request #310 from biowdl/BIOWDL-602Merge branch 'develop' into BIOWDL-602Use latest version of scriptsUpdate changelog with samtools changeAdd parameter_meta for targetFileupdate samtools containersBIOWDL-602BIOWDL-602Add targets file input to samtools viewincrease memory for amberMerge pull request #309 from biowdl/miniwdlMerge branch 'develop' into miniwdlincrease time for AmberMerge pull request #308 from biowdl/gridssadjusted runtime attributes for clever tasksupdate changelogfix issue where fastp errors if split is set to 1fix typing issue in AnnotateSvTypes R codegridssgridssremove second breakends in gridss AnnotateSvTypes scriptFallback to copying when hardlinking does not workUpdate time requirementsKG-667KG-667Add memory requirement for tabixAdd runtime requirements for UPDioSpecify WDL version for Updio file