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biowdl
tasks
Graph
817540cb90899fa51fc345806f1ac41476b07716
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Branches
20
5.29_update
5.31_update
BIOWDL-208
BIOWDL-213
BIOWDL-216
BIOWDL-232
BIOWDL-245
BIOWDL-247
BIOWDL-253
BIOWDL-258
BIOWDL-259
BIOWDL-261
BIOWDL-265
BIOWDL-269
BIOWDL-271
BIOWDL-279
BIOWDL-282
BIOWDL-292
BIOWDL-297
BIOWDL-298
Tags
17
v5.2.0
v5.1.0
v5.0.1
v5.0.0
v4.0.0
v3.1.0
v3.0.0
v2.1.0
v2.0.0
v1.0.0
v1.0
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v0.1
phhv1reassembly
phhv1assembly
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Created with Raphaël 2.2.0
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add germline task
add bcftools, clever, delly, lumpy, survivor
make featureAttribute optional in collect-columns
add collect-columns
Merge pull request #103 from biowdl/small_fixes
reduce memory for GetConfiguration
small fixes
Merge pull request #102 from biowdl/BIOWDL-213
Merge remote-tracking branch 'origin/develop' into BIOWDL-213
Added tasks for sv-workflow
sv-calling
sv-calling
Merge pull request #101 from biowdl/fix_vardict_threads
fix container string
BIOWDL-213
BIOWDL-213
remove linking
add dockerTag
correct the version
add threads input for vardict
fix_vardict_thr…
fix_vardict_threads
simplify and containerize bwa
containers_germ…
containers_germline_dna
fix missing values of additional attributes in mergecounts
fix_mergecounts
fix_mergecounts
Merge pull request #100 from biowdl/bamBasedScatter
Merge branch 'develop' into bamBasedScatter
add bamIndex input for scatterregions
add missing space
add bamFile input to scatterregions
fix missing additional attributes
BIOWDL-216
BIOWDL-216
fix issues with stringtie
v0.1.1 v0.1_hot…
v0.1.1 v0.1_hotfix
Merge pull request #99 from biowdl/add_copy
memory adjustments
add_copy
add_copy
R locale workaround
add copy task
fix picard mergeVcf memeory input
Merge pull request #98 from biowdl/BIOWDL-214
memory adjustments
docker added for somatic variantcallers
Merge pull request #97 from biowdl/BIOWDL-208
fix multiqc
BIOWDL-208
BIOWDL-208
remove precommand
dockerize multiqc
dockerize gffcompare
dockerize vcfstats
use bash container
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