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Created with Raphaël 2.2.019May1815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug221615141312Update picard.wdlUpdate CHANGELOG.Set all outputs to optional.Update CHANGELOG text.Make a number of outputs optional in Picard.repair hisat2add allFiles output to gffcomparefix missing parameter_metamake pdf files optionalhisat2.wdladd summary file to hisat2 taskadd reportfile output to starfix parameter_meta'Merge pull request #212 from biowdl/time_minutesMultiQC should work directly with report filesfix variable used for time_minutes estimation in bwatime_minutestime_minutesadress commentsMerge remote-tracking branch 'origin' into time_minutesMerge pull request #207 from biowdl/starIndexMerge branch 'develop' into starIndexstarIndexstarIndexupdate changelogMerge remote-tracking branch 'origin' into time_minutesadjust time_minutesotime_minutesMerge pull request #217 from biowdl/BIOWDL-457Add extra parameter_meta options for haplotypecallerRecord change in changelogtime_minutesmake minconfidence treshold optionalBIOWDL-457BIOWDL-457add options specific for RNA haplotype callingfix task order samtools and remove duplicate taskfix samtools sortMerge remote-tracking branch 'origin/develop' into time_minutesvarious changesminor adjustmentstime_minutes!more time_minutesMerge pull request #216 from biowdl/BIOWDL-453Update CHANGELOG.mdFix CHANGELOG.BIOWDL-453BIOWDL-453