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Created with Raphaël 2.2.06May29Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr2518add scripts submodulev0.3v0.3add output directoryupdate docker image and replace old reference with reference from bwaIndex structmodified output directoriesminor typo fixchange directory paths to structural-variantcalling/<caller>/<sample>/<files>memory adjustment fastqsplitteradjustementsadjustementsMerge pull request #105 from biowdl/collect_columnsreplaced ~{fileList} to fileListadd set -e and mkdir foldermemory adjustmentmade cleverMaxDelLength, maxLengthDiff, maxOffset optionalremoved .vcfadd set -e in mateclever taskplaced each option on its own line inside commandadd set -eremoved .vcf from the commandadd file array of pathsfixed typoimport common.wdlinsert filePaths inside survivorchnged indentation line 29changed outputPathremoved import common.wdlmoved each option to its own linemoved each option to its own lineadded outputDiradded RenameSample taskchanged output stringfixed struct indexingadd germline taskadd bcftools, clever, delly, lumpy, survivormake featureAttribute optional in collect-columnsadd collect-columnsMerge pull request #103 from biowdl/small_fixesreduce memory for GetConfigurationsmall fixesMerge pull request #102 from biowdl/BIOWDL-213Merge remote-tracking branch 'origin/develop' into BIOWDL-213Added tasks for sv-workflowsv-callingsv-calling