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Created with Raphaël 2.2.012Jun1165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May292824222117Merge branch 'develop' into KG-295Merge pull request #111 from biowdl/BIOWDL-245simpler md5sum checkBIOWDL-245BIOWDL-245Merge pull request #110 from biowdl/BIOWDL-245addressed review commentsremove globadd some statsadd referencedictadd fasta faisremove more structsdestroy another structdestroy another structdestroy structssimplify furthersimplifyfix tabixfix tabixrewrite tabixindex in the merge stepsome additionsmake samtools suitable for containersmake sure dir existscheck with bash containerMerge pull request #109 from biowdl/md5sumsMerge branch 'develop' into md5sumsmd5sumsmd5sumsstyleadd bedtools sortbetter commandcreate output dirsfix some referencesadd indexescapitalswiseguy completeMerge branch 'SVs' of https://github.com/biowdl/tasks into SVsincreased fastqsplitter memory multiplier to 7md5sums should be Strings not Filesstart on wiseguyadd year to licenseMerge pull request #108 from biowdl/BIOWDL-232increase memory multiplier