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Created with Raphaël 2.2.011Feb107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585Update clever.wdlUpdate clever.wdlupdate parameters metaminor fix: parameter meta in manta.wdlfix parameter metaupdate scripts submoduleadd parameter metaminor fixremoved bam.bai extension in samtools, changed in to just .baichanged OutputVcf to outputVcfUpdate samtools.wdl Update samtools.wdlchanged memory to stringremoved memort multiplier from picardadd scripts directoryMerge branch 'develop' into add_sv_taskssmall fixMerge branch 'add_sv_tasks' of github.com:biowdl/tasks into add_sv_tasksfix some sytax stylesUpdate clever.wdlfix writings according to bioWDL guidelineschange outputBam to ouputBAM under output parametermake dockerimages configurableMerge pull request #185 from biowdl/BIOWDL-400simplify the scatter stuffupdate changelogMerge remote-tracking branch 'origin/develop' into BIOWDL-400add FilterShortReadsBamremoved output structs from mantaadd parameter_metaadd pedigree to GenotypeGVCFadd pedigree filescatterregions always outputs ordered scattersMerge pull request #182 from biowdl/UMI-toolsupdate changelogfix lint scriptadd memory paramter_meta for umitools dedupupdate scripts submoduleremoved all manta output files except for diploidSV.vcfadd bamindex in manta