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Created with Raphaël 2.2.03Feb31Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221Update Krona container.add parameter_metatar the genomicsdbworkspace pathMerge remote-tracking branch 'origin' into BIOWDL-396fix missing directory and read2output umitoolsadd genomicsDBImportBIOWDL-396BIOWDL-396Add Centrifuge specific Krona task.BIOWDL-395BIOWDL-395fix parameter metabetter dbsnp flagcleanup genotypeGVCFsGenotypeGVCFs only works on a single fileadd umi-toolsMerge pull request #181 from biowdl/BIOWDL-331Replace moving with hardlinking.change inputFix command section for Inspect.Fix Centrifuge tests, where sometimes the index files could still not be located.Merge remote-tracking branch 'origin/develop' into BIOWDL-396adapt haplotypecallerMerge pull request #180 from biowdl/BIOWDL-386Update CHANGELOG.Update parameter_meta and fix centrifuge index locating.add missing parameter_metaMerge pull request #179 from biowdl/BIOWDL-393Merge branch 'develop' into BIOWDL-393Merge pull request #178 from biowdl/BIOWDL-386Merge branch 'develop' into BIOWDL-393update changelogadd index for commonvariantsitesUpdate CHANGELOG.Fix issue where Centrifuge could not locate index files.Merge branch 'develop' of https://github.com/biowdl/tasks into developfix bug where text to file does not work with other shells than bashMerge pull request #176 from biowdl/BIOWDL-385Merge branch 'develop' into BIOWDL-385Merge pull request #175 from biowdl/BIOWDL-319Merge branch 'develop' into BIOWDL-319Merge pull request #177 from biowdl/BIOWDL-386Update CHANGELOG.BIOWDL-386BIOWDL-386Fix issue where centrifuge would fail on incorrect paths.
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