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biowdl
tasks
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5badadc6d39eee62bc4c431c27c4c8a137ed6297
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5.29_update
5.31_update
BIOWDL-208
BIOWDL-213
BIOWDL-216
BIOWDL-232
BIOWDL-245
BIOWDL-247
BIOWDL-253
BIOWDL-258
BIOWDL-259
BIOWDL-261
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BIOWDL-279
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phhv1reassembly
phhv1assembly
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Created with Raphaël 2.2.0
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Update Krona container.
add parameter_meta
tar the genomicsdbworkspace path
Merge remote-tracking branch 'origin' into BIOWDL-396
fix missing directory and read2output umitools
add genomicsDBImport
BIOWDL-396
BIOWDL-396
Add Centrifuge specific Krona task.
BIOWDL-395
BIOWDL-395
fix parameter meta
better dbsnp flag
cleanup genotypeGVCFs
GenotypeGVCFs only works on a single file
add umi-tools
Merge pull request #181 from biowdl/BIOWDL-331
Replace moving with hardlinking.
change input
Fix command section for Inspect.
Fix Centrifuge tests, where sometimes the index files could still not be located.
Merge remote-tracking branch 'origin/develop' into BIOWDL-396
adapt haplotypecaller
Merge pull request #180 from biowdl/BIOWDL-386
Update CHANGELOG.
Update parameter_meta and fix centrifuge index locating.
add missing parameter_meta
Merge pull request #179 from biowdl/BIOWDL-393
Merge branch 'develop' into BIOWDL-393
Merge pull request #178 from biowdl/BIOWDL-386
Merge branch 'develop' into BIOWDL-393
update changelog
add index for commonvariantsites
Update CHANGELOG.
Fix issue where Centrifuge could not locate index files.
Merge branch 'develop' of https://github.com/biowdl/tasks into develop
fix bug where text to file does not work with other shells than bash
Merge pull request #176 from biowdl/BIOWDL-385
Merge branch 'develop' into BIOWDL-385
Merge pull request #175 from biowdl/BIOWDL-319
Merge branch 'develop' into BIOWDL-319
Merge pull request #177 from biowdl/BIOWDL-386
Update CHANGELOG.
BIOWDL-386
BIOWDL-386
Fix issue where centrifuge would fail on incorrect paths.
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