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Created with Raphaël 2.2.02Sep29Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul3027Higher mem requirement, more concise bash invocationbigger memory multiplier for filter mutect callsBIOWDL-298BIOWDL-298Revert "update filterMutectCalls memory multiplier"update filterMutectCalls memory multiplierUpdate default memory values and CombineVariants to run in SharkUpdated CHANGELOG for new TranscriptClean taskAdd WDL task for TranscriptCleanMerge pull request #133 from biowdl/BIOWDL-302check all wdlswomtool validate with newest version thanks to condaadd commentupdate changelogsimplify cutadapt interfaceMerge remote-tracking branch 'origin/develop' into bwakitMerge pull request #132 from biowdl/BIOWDL-302update changelogBIOWDL-302BIOWDL-302account for big vmem usage in mutectremove default adapter for cutadaptremove default adapterMerge remote-tracking branch 'origin/develop' into bwakitMerge pull request #129 from biowdl/BIOWDL-292Merge branch 'develop' into BIOWDL-292BIOWDL-292BIOWDL-292Merge pull request #131 from biowdl/JasperBoom-patch-dockerImageMerge branch 'develop' into JasperBoom-patch-dockerImageMerge pull request #130 from Amfgcp/fixes-run-sharkAdd update dockerTag to dockerImage to CHANGELOG.mdUpdate dockerTag to dockerImageupdate to run in Shark: memory values and no "-o pipefail"update changelogadd option to add .64 to index input for bwakitupdate fastqsplitterunify picardMerge pull request #128 from Amfgcp/m2-gatk4.1.2.0-updatesMerge branch 'm2-gatk4.1.2.0-updates' of https://github.com/Amfgcp/tasks into m2-gatk4.1.2.0-updatesupdate legibility for the CombineVariants commandMerge branch 'develop' into m2-gatk4.1.2.0-updatesupdate changelogfix FilterMutectCalls not creating expected output folderfix command according to style guidelineadd GATK3 CombineVariants as a task