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Created with Raphaël 2.2.026Jun2524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan302928272423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423add outputsadd markdup taskIncrease time estimates for sort tasksAdd new tasks to talon.Do not create md5 file by default anymorePicard markduplicates has a default compression of 1update picardUpdate sortsam task with extra variablesActually sort the inputBam, not stdoutMerge branch 'BIOWDL-475' of https://github.com/biowdl/tasks into BIOWDL-475use correct memory for sambamacorrect memory calculationadd threads on index as wellFix sambamba index command in sortAdd sortSam taskupdate parameter_metaMake sure samtools uses memoryPut sorting back into bwakit taskRevert "Don't sort"use newer more experimental imageuse correct memory estimateremove other sorting bitsUpdate samtools sort to also indexDon't sortDo not use unnecessary threadsUpdate changelog for pbmm2pbmm2pbmm2Add pbmm2, the PacBio wrapper for minimap2Merge pull request #224 from biowdl/chunkedscatterUpdate parameter_metachunkedscatterchunkedscatterUpdate changelogUpdate image and tasks for chunk scatterMerge pull request #223 from biowdl/BIOWDL-471Remove memoryGb from the input sectionadd javaxmx parameter_metaMerge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471Update changelogupdate gatk varianteval timesAdd scatter-regions to changelogMerge branch 'develop' into BIOWDL-471resource requirements for multiqc