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Created with Raphaël 2.2.027Jan2423222120171615141310987617Dec12111096227Nov262519765131Oct3028159872127Sep26252423201817161312111096543229Aug2216151413126542131Jul2928272619181716151211109832127Jun26252421201918171413121165429May2723222120151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Janupdate changelogmake memory configurable in fastqcMerge remote-tracking branch 'origin/develop' into CNV_callingupdate changelogMerge pull request #173 from biowdl/BIOWDL-387Merge branch 'develop' into BIOWDL-387Merge pull request #174 from biowdl/BIOWDL-386fix various issuesCNV_callingCNV_callingtypoUpdate CHANGELOG.Centrifuge should use -U instead of -1 with single end data.update parameter metaBIOWDL-387BIOWDL-387use broad's gatk containerupdate changelogfix mkdir in CreateReadCountPanelOfNormalsadd text to file tasktypotyposupdate changelogfix typoadd intersect bed taskfix missing backslashupdate changelogset pipefail to prevent errors in bed filesadd various CNV calling tasksMerge pull request #172 from biowdl/BIOWDL-377Merge branch 'BIOWDL-377' of https://github.com/biowdl/tasks into BIOWDL-377Make bedFiles obligatoryfix indentationupdate submodulesadd changes to changelogMerge remote-tracking branch 'remotes/origin/develop' into BIOWDL-377Merge branch 'develop' into CNV_callingadd AnnotateIntervals, CollectReadCounts, CreateReadCountPanelOfNormals and PreprocessIntervalsMerge pull request #170 from biowdl/BIOWDL-380Fix CI error.reorder gatk.wdlRename cores to threads.Merge branch 'BIOWDL-380' of https://github.com/biowdl/tasks into BIOWDL-380Update LINCENSE date.