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Created with Raphaël 2.2.024Jul2319181716131153228Jun2120191814131211876530May29282422211714119874326Apr25181713121110654329Mar2120191615141312986126Feb22219831Jan3029191817turn optional with default into mandatory with defaultMerge branch 'develop' into reduceComplexityreduce task complexitiesMerge pull request #35 from biowdl/fix_validateFastqstyleMerge branch 'develop' into fix_validateFastqMerge pull request #34 from biowdl/BIOWDL-38added stylish newlinestypoMerge branch 'BIOWDL-38' of github.com:biowdl/tasks into BIOWDL-38style fixesadd index inputsFix output directoryMerge branch 'develop' into BIOWDL-38Merge pull request #33 from biowdl/fix_validateFastqunicycler to 1.0stringtie to 1.0star to 1.0spades to 1.0Merge remote-tracking branch 'origin/macs2' into macs2seqtk to 1.0Fix output directorysamtools to 1.0ignore downloaded jars for checkingMerge remote-tracking branch 'origin/macs2' into macs2Fix output directoryimproved testing scriptpicard to 1.0ncbi to 1.0mergecounts to 1.0macs2 and htseq.wdl to 1.0gatk to 1.0flash to 1.0fastqc to 1.0cutadapt to 1.0common to 1.0centrifuge to 1.0bwa.wdl to 1.0new style variable thingsadd missing spaces in validateannotation