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Created with Raphaël 2.2.028Oct262524211411723Sep1226Aug25232219181185229Jul2826184130Jun2322171630May8Apr18Mar987432125Feb2415141110928Jan27261918171411416Dec1514626Nov1715131211109829Oct28130Sep241723Aug20181029Jul2721201998752130Jun2928252221161514111072131May2825211920Apr1514131230Mar29252322191817118424Feb22211918169428Jan21158628Dec24221615119130Nov272625191712111096543230Oct2827262216151312987652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827Merge pull request #306 from biowdl/BIOWDL-589Add time_minutes dockerimage and update parameter_metaBIOWDL-589BIOWDL-589Use samtools dict instead of Picard CreateSequenceDictionaryAdd indexing tasks to the changelogMake index use the basename of the fileUse the basename of the input file for index namesMake sure index task worksCopy reference to prevent problemsAdd a Bwa index tasktypoAdd a task to produce fasta indicesfastp: use number of splits as number of threads if setincrease memory for fastpincrease memory for fastptypofix fastp taskfix some issues in fastp, add picard CollectInzertSizeMetricsadd fastptypo5.29_update5.29_updateupdate outputs for amber and cobaltupdate docker image for hmftools amber and cobaltMerge remote-tracking branch 'origin/develop' into 5.29_updatefix output names gripssupdate survivor versionbiowdl-595biowdl-595fix parameter_metafix some issuesMerge pull request #305 from biowdl/BIOWDL-596add missing required input for amberUpdate changelog with memory changeUse gebibytes instead of gigabytesUse gebibytes instead of Gigabytesminiwdlminiwdlfix sage ref genome versionadd docker for lilac, increase memory for cobaltfix some issuesstart adding lilacmake purple's somaticRainfallPlot output optionalchanges for WGSinCancerDiagnosticsupdate pave parameter_metaMerge remote-tracking branch 'origin/develop' into 5.29_updateMerge pull request #304 from biowdl/performance