Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
T
tasks
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
biowdl
tasks
Repository graph
Repository graph
You can move around the graph by using the arrow keys.
37ba60dd104f3a221c29d6fd6cf2e5c2be76e1ce
Select Git revision
Branches
20
5.29_update
5.31_update
BIOWDL-208
BIOWDL-213
BIOWDL-216
BIOWDL-232
BIOWDL-245
BIOWDL-247
BIOWDL-253
BIOWDL-258
BIOWDL-259
BIOWDL-261
BIOWDL-265
BIOWDL-269
BIOWDL-271
BIOWDL-279
BIOWDL-282
BIOWDL-292
BIOWDL-297
BIOWDL-298
Tags
17
v5.2.0
v5.1.0
v5.0.1
v5.0.0
v4.0.0
v3.1.0
v3.0.0
v2.1.0
v2.0.0
v1.0.0
v1.0
v0.3
v0.1.1
v0.2
v0.1
phhv1reassembly
phhv1assembly
37 results
Begin with the selected commit
Created with Raphaël 2.2.0
17
Jan
14
11
4
16
Dec
15
14
6
26
Nov
17
15
13
12
11
10
9
8
29
Oct
28
1
30
Sep
24
17
23
Aug
20
18
10
29
Jul
27
21
20
19
9
8
7
5
2
1
30
Jun
29
28
25
22
21
16
15
14
11
10
7
2
1
31
May
28
25
21
19
20
Apr
15
14
13
12
30
Mar
29
25
23
22
19
18
17
11
8
4
24
Feb
22
21
19
18
16
9
4
28
Jan
21
15
8
6
28
Dec
24
22
16
15
11
9
1
30
Nov
27
26
25
19
17
12
11
10
9
6
5
4
3
2
30
Oct
28
27
26
22
16
15
13
12
9
8
7
6
5
2
1
29
Sep
24
23
21
16
15
14
11
10
9
7
4
2
1
26
Aug
24
20
19
18
17
14
13
12
11
10
7
6
5
29
Jul
28
27
23
22
21
20
17
16
15
13
9
7
6
3
2
1
30
Jun
29
26
25
24
23
22
19
18
17
16
15
12
11
10
9
8
Use set_tag call from pysam
Add format parameter to macs2
Use more conventional list unpacking for clarity
Update changelog
Correct output files
Also create directories
Dedent overindented code
Add umiTagName flag
Add script to extract umi from read name
Allow multiple bam inputs
Make sure task is consistent
update changelog
samtoolsAddOpti…
samtoolsAddOptionalIndexFileAsInput
Merge branch 'develop' into samtoolsAddOptionalIndexFileAsInput
add annotateBamWithUmi
add umiAwareMarkDuplicate
Use mamba-forge and mamba to install dependencies
Merge pull request #295 from biowdl/BIOWDL-576
More correct evaluation of controlBams input
Update changelog
Add time minutes parameter
Add parameter_meta for macs2
Require 5 minutes
BIOWDL-576
BIOWDL-576
Add sampleposition in array task
give dictionary and index to virusbreakend
Merge branch 'develop' into samtoolsAddOptionalIndexFileAsInput
make recovery sv vcf optional in purple
gridss more memory
change gridss runtime settings
use alternative gridss image for virusbreakend
increase gridss memory
increase memory gridss
upgrade gridss to 2.12.2
try version 2.11.1 for gridss
add img input for virusbreakend
Merge pull request #293 from leipzig/patch-1
Merge pull request #1 from leipzig/patch-2
Update CHANGELOG.md
Update chunked-scatter.wdl
increase memory for sambamba markdup
Merge pull request #292 from biowdl/famm-run
Loading