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Created with Raphaël 2.2.025Apr24231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May29282422211714119874326Apr251817modified output directoriesminor typo fixchange directory paths to structural-variantcalling/<caller>/<sample>/<files>memory adjustment fastqsplitteradjustementsadjustementsMerge pull request #105 from biowdl/collect_columnsreplaced ~{fileList} to fileListadd set -e and mkdir foldermemory adjustmentmade cleverMaxDelLength, maxLengthDiff, maxOffset optionalremoved .vcfadd set -e in mateclever taskplaced each option on its own line inside commandadd set -eremoved .vcf from the commandadd file array of pathsfixed typoimport common.wdlinsert filePaths inside survivorchnged indentation line 29changed outputPathremoved import common.wdlmoved each option to its own linemoved each option to its own lineadded outputDiradded RenameSample taskchanged output stringfixed struct indexingadd germline taskadd bcftools, clever, delly, lumpy, survivormake featureAttribute optional in collect-columnsadd collect-columnsMerge pull request #103 from biowdl/small_fixesreduce memory for GetConfigurationsmall fixesMerge pull request #102 from biowdl/BIOWDL-213Merge remote-tracking branch 'origin/develop' into BIOWDL-213Added tasks for sv-workflowsv-callingsv-callingMerge pull request #101 from biowdl/fix_vardict_threadsfix container stringBIOWDL-213BIOWDL-213remove linking