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Created with Raphaël 2.2.021May20151397629Apr262524231817161585429Mar2521201918141312875126Feb252221201918141174121Jan8731Dec241312117654329Nov272623222115131298752129Oct2625242322191817169827Sep2625241817131210643231Aug2928272423222120171615109863231Jul30272625242319181716131153228Jun2120191814131211876530May2928242221171411987wiseguy completeMerge branch 'SVs' of https://github.com/biowdl/tasks into SVsincreased fastqsplitter memory multiplier to 7md5sums should be Strings not Filesstart on wiseguyadd year to licenseMerge pull request #108 from biowdl/BIOWDL-232increase memory multiplierincrease memory for vcfBIOWDL-232BIOWDL-232higher memory multiplier for fastqsplitterMerge pull request #107 from biowdl/BIOWDL-232fix logic and formattingcorrectifynewer version of cutadaptallow for single adapter and contaminations input in cutadaptMerge pull request #106 from biowdl/BIOWDL-232correct outputsset extract default to falseadd export hexdumpsetting next versionadd scripts submodulev0.3v0.3add output directoryupdate docker image and replace old reference with reference from bwaIndex structmodified output directoriesminor typo fixchange directory paths to structural-variantcalling/<caller>/<sample>/<files>memory adjustment fastqsplitteradjustementsadjustementsMerge pull request #105 from biowdl/collect_columnsreplaced ~{fileList} to fileListadd set -e and mkdir foldermemory adjustmentmade cleverMaxDelLength, maxLengthDiff, maxOffset optionalremoved .vcfadd set -e in mateclever taskplaced each option on its own line inside commandadd set -eremoved .vcf from the commandadd file array of pathsfixed typoimport common.wdl
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