Merge requests · biowdl / tasks

added fastq pair struct

!60 · created Sep 04, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Sep 04, 2018
Switch to structs

!61 · created Sep 10, 2018 by Ruben Vorderman develop
- MERGED
- 3
updated Sep 18, 2018
Switch bwa index to struct

!56 · created Aug 29, 2018 by Ruben Vorderman develop
- MERGED
- 1
updated Aug 29, 2018
Fixing small issues

!58 · created Sep 03, 2018 by Ruben Vorderman develop
- MERGED
- 4
updated Sep 03, 2018
Fixed defaults

!57 · created Aug 29, 2018 by Ruben Vorderman develop
- MERGED
- 2
updated Aug 29, 2018
add BedTOIntervalList

!55 · created Aug 23, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 23, 2018
Added alt post script

!54 · created Aug 23, 2018 by Ruben Vorderman develop
- MERGED
- 2
updated Aug 28, 2018
Add seqstat generate. ValidateFastq now validates files.

!53 · created Aug 23, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 23, 2018
Added more structs

!52 · created Aug 22, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 22, 2018
Fixing outputs

!51 · created Aug 21, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 21, 2018
Fix fastqc and cutadapt for use with WDL 1.0

!47 · created Aug 20, 2018 by Ruben Vorderman develop
- MERGED
- 1
updated Aug 20, 2018
Added sctruct for index files

!50 · created Aug 20, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 21, 2018
add output to VcfStats

!49 · created Aug 20, 2018 by Ruben Vorderman develop
- MERGED
- 1
updated Aug 20, 2018
Added Cromwell array tool

!48 · created Aug 20, 2018 by Ruben Vorderman develop
- MERGED
- 2
updated Aug 20, 2018
typo

!42 · created Jul 27, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Jul 27, 2018
Changes for somatic variantcalling

!45 · created Aug 16, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 16, 2018
fix outputs for metrics picard metrics

!46 · created Aug 17, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 17, 2018
fix somatic tasks and add supporting tasks

!43 · created Aug 03, 2018 by Ruben Vorderman develop
- MERGED
- 6
updated Aug 09, 2018
fix regex in slitNCigarReads

!44 · created Aug 15, 2018 by Ruben Vorderman develop
- MERGED
- 0
updated Aug 15, 2018
fix type of R2_md5 (String to String?)

!41 · created Jul 27, 2018 by Ruben Vorderman develop
- MERGED
- 1
updated Jul 27, 2018