fix somatic tasks and add supporting tasks (!43) · Merge requests · biowdl / tasks · GitLab

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Merged Ruben Vorderman requested to merge somatic into develop 6 years ago

Created by: DavyCats

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Ruben Vorderman @rhpvorderman started a thread on commit 4c1e509b 6 years ago

	1	version 1.0
	2
	3	task Somatic {
Ruben Vorderman @rhpvorderman · 6 years ago Author Owner Created by: ffinfo Why is task called Somatic while the tool is called manta?

Ruben Vorderman @rhpvorderman started a thread on an outdated change in commit 4c1e509b 6 years ago

Ruben Vorderman @rhpvorderman started a thread on an outdated change in commit 4c1e509b 6 years ago

Ruben Vorderman @rhpvorderman started a thread on commit 4c1e509b 6 years ago

	1	version 1.0
	2
	3	task Somatic {
Ruben Vorderman @rhpvorderman · 6 years ago Author Owner Created by: DavyCats Manta has two possible configurations, somatic and germline. I didn't implement the option for germline SV calling, but as that might be implemented in the future I thought naming this somatic would be more appropriate (like how the BWA mapping task is called 'Mem' and not 'Bwa').

Ruben Vorderman @rhpvorderman started a thread on an outdated change in commit 4c1e509b 6 years ago

Ruben Vorderman @rhpvorderman started a thread on commit 4c1e509b 6 years ago

	1	version 1.0
	2
	3	task Somatic {
Ruben Vorderman @rhpvorderman · 6 years ago Author Owner Created by: ffinfo

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