Commits · e323a23dc13433ce4bb8bd71d94f840e0627babb · biowdl / tasks

Jun 11, 2020
- Update minimumIdentity to correct type and default. · e323a23d
  JasperBoom authored 4 years ago
  
  e323a23d
Jun 10, 2020
- Fix spelling error in parameter_meta of common.wdl · d15fedbf
  JasperBoom authored 4 years ago
  
  d15fedbf
Jun 09, 2020
- Merge pull request #220 from biowdl/BIOWDL-469 · 2ffa3586
  Ruben Vorderman authored 4 years ago
  
  Add bcftools stats and GATK VariantEval
  Unverified
  
  2ffa3586
Jun 08, 2020
- Remove empty line · a967bf6b
  Ruben Vorderman authored 4 years ago
  
  a967bf6b
- complete parameter_meta for bcf tools · f2c1d5ba
  Ruben Vorderman authored 4 years ago
  
  f2c1d5ba
Jun 05, 2020
- update changelog · 00e1180c
  Ruben Vorderman authored 4 years ago
  
  00e1180c
- fix stats task · 2eca5b51
  Ruben Vorderman authored 4 years ago
  
  2eca5b51
- fix typo and use newer version of GATK · 3eccb5b7
  Ruben Vorderman authored 4 years ago
  
  3eccb5b7
- fix typo · 6e4334c2
  Ruben Vorderman authored 4 years ago
  
  6e4334c2
May 28, 2020
- add variant eval parameter_meta · c58cf218
  Ruben Vorderman authored 4 years ago
  
  c58cf218
- start on variant eval · 25bb7b38
  Ruben Vorderman authored 4 years ago
  
  25bb7b38
- add dockerimage · 12420e38
  Ruben Vorderman authored 4 years ago
  
  12420e38
- add bcftools stats · 63202c73
  Ruben Vorderman authored 4 years ago
  
  63202c73
May 20, 2020
- add missing parameter_meta · 0211661c
  Cats authored 4 years ago
  
  0211661c
- Merge pull request #219 from biowdl/BIOWDL-464 · d524e6fd
  Ruben Vorderman authored 4 years ago
  
  Fixes for proper MultiQC integration
  Unverified
  
  d524e6fd
- add gffcompare output · a879f1c7
  Ruben Vorderman authored 4 years ago
  
  a879f1c7
May 19, 2020
- Add summaryFilePath parameter_meta · 8aa9d7ea
  Ruben Vorderman authored 4 years ago
  
  8aa9d7ea
- Parameter meta for multiqc updated. Make sure data dir output is always zipped by default. · 6fbe1b7f
  Ruben Vorderman authored 4 years ago
  
  6fbe1b7f
- Merge branch 'BIOWDL-464' of https://github.com/biowdl/tasks into BIOWDL-464 · ce22935b
  Ruben Vorderman authored 4 years ago
  
  ce22935b
- cleanup multiqc. Add comments on how it works · d3832132
  Ruben Vorderman authored 4 years ago
  
  d3832132
- Update changelog with changes and to a newer version · 408f06c6
  Ruben Vorderman authored 4 years ago
  
  408f06c6
- Merge origin/develop into BIOWDL-464 · b0b19669
  Ruben Vorderman authored 4 years ago
  
  b0b19669
- fix missing paramter_meta · f8198099
  Cats authored 4 years ago
  
  f8198099
- Merge pull request #218 from biowdl/BIOWDL-465 · dc1e96bb
  Jasper authored 4 years ago
  
  BIOWDL-465: Make a number of outputs optional in Picard.
  Unverified
  
  dc1e96bb
- Update picard.wdl · 48aef36c
  Jasper authored 4 years ago
  
  Co-authored-by: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  48aef36c
- Update CHANGELOG. · ab21de84
  JasperBoom authored 4 years ago
  
  ab21de84
- Set all outputs to optional. · 28cb8e8d
  JasperBoom authored 4 years ago
  
  28cb8e8d
- Update CHANGELOG text. · 42c6d473
  JasperBoom authored 4 years ago
  
  42c6d473
- Make a number of outputs optional in Picard. · dbe93a9e
  JasperBoom authored 4 years ago
  
  dbe93a9e
May 18, 2020
- repair hisat2 · efd99dda
  Ruben Vorderman authored 4 years ago
  
  efd99dda
- add allFiles output to gffcompare · f5f38a7b
  Ruben Vorderman authored 4 years ago
  
  f5f38a7b
- fix missing parameter_meta · e055553d
  Cats authored 4 years ago
  
  e055553d
- make pdf files optional · 17cdbd13
  Ruben Vorderman authored 4 years ago
  
  17cdbd13
- hisat2.wdl · cf652ee3
  Ruben Vorderman authored 4 years ago
  
  cf652ee3
- add summary file to hisat2 task · e1806e2e
  Ruben Vorderman authored 4 years ago
  
  e1806e2e
- add reportfile output to star · 44a372ed
  Ruben Vorderman authored 4 years ago
  
  44a372ed
- fix parameter_meta' · d8271dc1
  Ruben Vorderman authored 4 years ago
  
  d8271dc1
- Merge pull request #212 from biowdl/time_minutes · 2ad7973b
  Cats authored 4 years ago
  
  Add time_minutes runtime_attribute
  Unverified
  
  2ad7973b
- MultiQC should work directly with report files · c3dbda9b
  Ruben Vorderman authored 4 years ago
  
  c3dbda9b
May 15, 2020
- fix variable used for time_minutes estimation in bwa · c535d259
  Cats authored 4 years ago
  
  c535d259