Commits · d993500b08a8cf26fa5c516392d47b99425107be · biowdl / tasks

May 09, 2019
- allow for single adapter and contaminations input in cutadapt · d993500b
  Ruben Vorderman authored 5 years ago
  
  d993500b
May 07, 2019
- Merge pull request #106 from biowdl/BIOWDL-232 · c59afe49
  Ruben Vorderman authored 5 years ago
  
  Do not extract fastqc zip by default.
  Unverified
  
  c59afe49
- correct outputs · 42da877d
  Ruben Vorderman authored 5 years ago
  
  42da877d
- set extract default to false · b2918a10
  Ruben Vorderman authored 5 years ago
  
  b2918a10
May 06, 2019
- setting next version · b0b1ae2a
  Ruben Vorderman authored 5 years ago
  
  b0b1ae2a
- add scripts submodule · 53dbf148
  Ruben Vorderman authored 5 years ago
  
  View commits for tag v0.3 v0.3
  
  53dbf148
Apr 23, 2019
- Merge pull request #105 from biowdl/collect_columns · dc8b2eed
  Cats authored 5 years ago
  
  add Collect columns task
  Unverified
  
  dc8b2eed
Apr 15, 2019
- make featureAttribute optional in collect-columns · e3f5352b
  Cats authored 6 years ago
  
  e3f5352b
- add collect-columns · ab93e5a8
  Cats authored 6 years ago
  
  ab93e5a8
Apr 08, 2019
- Merge pull request #103 from biowdl/small_fixes · 0ac16be7
  Cats authored 6 years ago
  
  small fixes
  Unverified
  
  0ac16be7
Apr 05, 2019
- reduce memory for GetConfiguration · 6a0abb57
  Cats authored 6 years ago
  
  6a0abb57
Apr 04, 2019
- small fixes · 4687394a
  Cats authored 6 years ago
  
  4687394a
Mar 29, 2019
- Merge pull request #102 from biowdl/BIOWDL-213 · 72241b6d
  Ruben Vorderman authored 6 years ago
  
  Fixes for containerizing germline-dna pipeline
  Unverified
  
  72241b6d
- Merge remote-tracking branch 'origin/develop' into BIOWDL-213 · 2d4e6017
  Ruben Vorderman authored 6 years ago
  
  2d4e6017
Mar 25, 2019
- Merge pull request #101 from biowdl/fix_vardict_threads · 43129743
  Ruben Vorderman authored 6 years ago
  
  Set additional cpus for vardict
  Unverified
  
  43129743
Mar 21, 2019
- fix container string · 4b87337d
  Ruben Vorderman authored 6 years ago
  
  4b87337d
- remove linking · 39c6043d
  Ruben Vorderman authored 6 years ago
  
  39c6043d
- add dockerTag · 163b0cc4
  Ruben Vorderman authored 6 years ago
  
  163b0cc4
- correct the version · b6431b36
  Ruben Vorderman authored 6 years ago
  
  b6431b36
- add threads input for vardict · 5add5ff9
  Cats authored 6 years ago
  
  5add5ff9
Mar 20, 2019
- simplify and containerize bwa · 1f117c45
  Cats authored 6 years ago
  
  1f117c45
Mar 19, 2019
- Merge pull request #100 from biowdl/bamBasedScatter · 2b093b83
  Ruben Vorderman authored 6 years ago
  
  add bamFile input to scatterregions
  Unverified
  
  2b093b83
- Merge branch 'develop' into bamBasedScatter · 811ed1ec
  Ruben Vorderman authored 6 years ago
  
  Unverified
  
  811ed1ec
Mar 18, 2019
- add bamIndex input for scatterregions · 09847a39
  Cats authored 6 years ago
  
  09847a39
- add missing space · 462872a3
  Cats authored 6 years ago
  
  462872a3
- add bamFile input to scatterregions · 07df9722
  Cats authored 6 years ago
  
  07df9722
Mar 13, 2019
- Merge pull request #99 from biowdl/add_copy · 8986cd5d
  Ruben Vorderman authored 6 years ago
  
  Add copy
  Unverified
  
  8986cd5d
Mar 12, 2019
- memory adjustments · 93e321ee
  Cats authored 6 years ago
  
  93e321ee
Mar 08, 2019
- R locale workaround · 182458b8
  Cats authored 6 years ago
  
  182458b8
- add copy task · be39814e
  Cats authored 6 years ago
  
  be39814e
Mar 07, 2019
- fix picard mergeVcf memeory input · c65f20ea
  Cats authored 6 years ago
  
  c65f20ea
Mar 05, 2019
- Merge pull request #98 from biowdl/BIOWDL-214 · 67bbaeda
  Ruben Vorderman authored 6 years ago
  
  docker added for somatic variantcallers
  Unverified
  
  67bbaeda
- memory adjustments · 35751a5f
  Cats authored 6 years ago
  
  35751a5f
Mar 01, 2019
- docker added for somatic variantcallers · dd97cb46
  Cats authored 6 years ago
  
  dd97cb46
Feb 26, 2019
- Merge pull request #97 from biowdl/BIOWDL-208 · 34d0d144
  Ruben Vorderman authored 6 years ago
  
  Containerize tasks for RNA-seq
  Unverified
  
  34d0d144
Feb 25, 2019
- fix multiqc · c3c483de
  Ruben Vorderman authored 6 years ago
  
  c3c483de
- remove precommand · e6e88a0f
  Ruben Vorderman authored 6 years ago
  
  e6e88a0f
- dockerize multiqc · 7a913a26
  Ruben Vorderman authored 6 years ago
  
  7a913a26
- dockerize gffcompare · f5ba74d4
  Ruben Vorderman authored 6 years ago
  
  f5ba74d4
- dockerize vcfstats · 81717966
  Ruben Vorderman authored 6 years ago
  
  81717966