Commits · af075999debec07b821010b0e0d260c23b41e143 · biowdl / tasks

Oct 27, 2020
- Update CHANGELOG.md · af075999
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  af075999
- Remove duplicate parameter meta entry · a7445b82
  van den Berg authored 4 years ago
  
  a7445b82
- Merge branch 'Pacbio-variantcalling' of https://github.com/biowdl/tasks into Pacbio-variantcalling · a2ebd7fa
  van den Berg authored 4 years ago
  
  a2ebd7fa
- Add support for outputPrefix with or without folder · 7db21a64
  van den Berg authored 4 years ago
  
  7db21a64
- Update pbbam.wdl · a82be38c
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  a82be38c
Oct 22, 2020
- Add memory to samtools Merge · 37ba60dd
  van den Berg authored 4 years ago
  
  37ba60dd
Oct 15, 2020
- Merge branch 'develop' into Pacbio-variantcalling · e6c82279
  van den Berg authored 4 years ago
  
  Unverified
  
  e6c82279
- Rename parameter meta for index · 289a42d5
  van den Berg authored 4 years ago
  
  289a42d5
- Merge pull request #252 from biowdl/bugfix · 777229b4
  van den Berg authored 4 years ago
  
  Add parameter meta for threads
  Unverified
  
  777229b4
- Remove most inputs · 3fa0f141
  van den Berg authored 4 years ago
  
  3fa0f141
Oct 13, 2020
- Merge branch 'develop' into bugfix · 6a32de90
  van den Berg authored 4 years ago
  
  Unverified
  
  6a32de90
- Merge branch 'develop' into Pacbio-variantcalling · bd62a1c4
  van den Berg authored 4 years ago
  
  Unverified
  
  bd62a1c4
Oct 12, 2020
- Merge pull request #257 from biowdl/bcftools_add_tmp · 3c6d6383
  Cedrick Agaser authored 4 years ago
  
  bcftools: add tmpDir input to specify temporary directory when sorting.
  Unverified
  
  3c6d6383
- add tmpDir to parameter_meta section · 72ad1f1b
  cagaser authored 4 years ago
  
  72ad1f1b
- add tmpDir input to specify temporary directory when sorting. · 15343889
  cagaser authored 4 years ago
  
  15343889
- Update CHANGELOG.md · 14d31182
  Jasper authored 4 years ago
  
  Unverified
  
  14d31182
Oct 09, 2020
- Merge pull request #256 from biowdl/optional-indexing · e9d123a9
  Cedrick Agaser authored 4 years ago
  
  Optional indexing
  Unverified
  
  e9d123a9
- Merge branch 'develop' into optional-indexing · 61b95510
  Cedrick Agaser authored 4 years ago
  
  Unverified
  
  61b95510
- update CHANGELOG · d96e2b14
  cagaser authored 4 years ago
  
  d96e2b14
- remove outputType and indexing instead based on extension of the file · 7c065d40
  cagaser authored 4 years ago
  
  7c065d40
Oct 08, 2020
- Add parameter meta for CollectHsMetrics · 353224aa
  van den Berg authored 4 years ago
  
  353224aa
- Update parameter meta · b6178110
  van den Berg authored 4 years ago
  
  b6178110
- Update picard.wdl · 31bbeddf
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  31bbeddf
- Update CHANGELOG.md · 80c84a4a
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  80c84a4a
- Update CHANGELOG.md · d4cfd015
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  d4cfd015
- Update CHANGELOG.md · 1f0a112b
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  1f0a112b
- Update CHANGELOG.md · f531d274
  van den Berg authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  f531d274
Oct 07, 2020
- Merge pull request #253 from biowdl/BIOWDL-499 · ab61b67a
  Jasper authored 4 years ago
  
  BIOWDL-499: Update parameter_meta.
  Unverified
  
  ab61b67a
- Update changelog · 78868150
  van den Berg authored 4 years ago
  
  78868150
- Add whatshap tasks · 41024c35
  van den Berg authored 4 years ago
  
  41024c35
- Add deepvariant tasks · e2fbf4a0
  van den Berg authored 4 years ago
  
  e2fbf4a0
- Add HsMetrics and VariantcallingMetrics to picard · a2ae010f
  van den Berg authored 4 years ago
  
  a2ae010f
- Increase runtime and add sample name for pbmm2 · d786fcec
  van den Berg authored 4 years ago
  
  d786fcec
- Make intervals optional for gatk GenotypeGVCFs · d8848dc9
  van den Berg authored 4 years ago
  
  d8848dc9
- Add task for indexing PacBio bam files · 5ca9c5e2
  van den Berg authored 4 years ago
  
  5ca9c5e2
- Simplify lima output structure · 571544cb
  van den Berg authored 4 years ago
  
  571544cb
- Add bam index file as required input for isoseq · 0dd0afd6
  van den Berg authored 4 years ago
  
  0dd0afd6
- Ensure that the index and bamfiles are in the same folder · 6eaf2144
  van den Berg authored 4 years ago
  
  6eaf2144
- Update parameter_meta. · 2fdabcca
  JasperBoom authored 4 years ago
  
  2fdabcca
Oct 06, 2020
- Update samtools.wdl · afe60006
  van den Berg authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  Unverified
  
  afe60006