Commits · a2ae010f8efa3f9d03ea99b61038419956be98b3 · biowdl / tasks

Oct 07, 2020
- Add HsMetrics and VariantcallingMetrics to picard · a2ae010f
  van den Berg authored 4 years ago
  
  a2ae010f
- Increase runtime and add sample name for pbmm2 · d786fcec
  van den Berg authored 4 years ago
  
  d786fcec
- Make intervals optional for gatk GenotypeGVCFs · d8848dc9
  van den Berg authored 4 years ago
  
  d8848dc9
- Add task for indexing PacBio bam files · 5ca9c5e2
  van den Berg authored 4 years ago
  
  5ca9c5e2
- Simplify lima output structure · 571544cb
  van den Berg authored 4 years ago
  
  571544cb
- Add bam index file as required input for isoseq · 0dd0afd6
  van den Berg authored 4 years ago
  
  0dd0afd6
- Ensure that the index and bamfiles are in the same folder · 6eaf2144
  van den Berg authored 4 years ago
  
  6eaf2144
Sep 23, 2020
- Merge pull request #251 from biowdl/BIOWDL-516 · afac85df
  Jasper authored 4 years ago
  
  BIOWDL-516: Remove metrics file.
  Unverified
  
  afac85df
Sep 21, 2020
- Change indexing. · fbbfc5be
  JasperBoom authored 4 years ago
  
  fbbfc5be
- Remove metrics file. · 041721c1
  JasperBoom authored 4 years ago
  
  041721c1
Sep 16, 2020
- Merge pull request #250 from biowdl/BIOWDL-499 · e0692dcb
  Jasper authored 4 years ago
  
  BIOWDL-499: Add NanoQC and NanoPlot.
  Unverified
  
  e0692dcb
- Merge branch 'BIOWDL-499' of https://github.com/biowdl/tasks into BIOWDL-499 · 3df6908f
  JasperBoom authored 4 years ago
  
  3df6908f
- Make some outputs optional. · af550dd0
  JasperBoom authored 4 years ago
  
  af550dd0
- Merge branch 'develop' into BIOWDL-499 · 72992b66
  Jasper authored 4 years ago
  
  Unverified
  
  72992b66
- Merge pull request #249 from biowdl/BIOWDL-512 · cb6a60ef
  Jasper authored 4 years ago
  
  BIOWDL-512: Add timeMinutes to Classify.
  Unverified
  
  cb6a60ef
- Fix. · c0152eb1
  JasperBoom authored 4 years ago
  
  c0152eb1
- Merge branch 'develop' into BIOWDL-499 · 6dda1411
  Jasper authored 4 years ago
  
  Unverified
  
  6dda1411
- Merge develop. · e6c9262a
  JasperBoom authored 4 years ago
  
  e6c9262a
- Complete parameter_meta. · 5b46df4b
  JasperBoom authored 4 years ago
  
  5b46df4b
- Merge branch 'develop' into BIOWDL-512 · c61d28bd
  Jasper authored 4 years ago
  
  Unverified
  
  c61d28bd
Sep 15, 2020
- Merge pull request #247 from biowdl/optional-indexing · eedf33e0
  Cedrick Agaser authored 4 years ago
  
  Optional indexing
  Unverified
  
  eedf33e0
Sep 14, 2020
- Update CHANGELOG.md · 39aa53fe
  Jasper authored 4 years ago
  
  Unverified
  
  39aa53fe
- Merge branch 'develop' into BIOWDL-499 · 6f1a76cb
  Jasper authored 4 years ago
  
  Unverified
  
  6f1a76cb
- Update changelog. · 00b947f9
  JasperBoom authored 4 years ago
  
  00b947f9
- Add NanoQC and NanoPlot. · 68120ed6
  JasperBoom authored 4 years ago
  
  68120ed6
- Update CHANGELOG. · 70747bdf
  JasperBoom authored 4 years ago
  
  70747bdf
- Add timeMinutes to Classify. · ece83524
  JasperBoom authored 4 years ago
  
  ece83524
Sep 10, 2020
- add paramter meta compressionLevel · a651adc5
  cagaser authored 4 years ago
  
  a651adc5
- Merge branch 'develop' of https://github.com/biowdl/tasks into optional-indexing · 35359e51
  cagaser authored 4 years ago
  
  35359e51
- Merge pull request #248 from biowdl/upddate_cc · 0ab0f9a1
  Cats authored 4 years ago
  
  Upddate collect-columns
  Unverified
  
  0ab0f9a1
Sep 09, 2020
- update changelog · 452b5810
  Cats authored 4 years ago
  
  452b5810
- update collect-columns to 1.0.0 · 33cdf52e
  Cats authored 4 years ago
  
  33cdf52e
Sep 07, 2020
- Merge branch 'develop' into optional-indexing · 3f768510
  Cedrick Agaser authored 4 years ago
  
  Unverified
  
  3f768510
- made output extension depends on compression level · 5781179d
  cagaser authored 4 years ago
  
  5781179d
- make bcftools indexing optional · 7bc3c58d
  cagaser authored 4 years ago
  
  7bc3c58d
- Merge pull request #246 from biowdl/update-survivor · 748ed63b
  Cats authored 4 years ago
  
  Update survivor
  Unverified
  
  748ed63b
Sep 04, 2020
- update CHANGELOG · f1209328
  cagaser authored 4 years ago
  
  f1209328
- replace binary digits to boolean · 4b249fde
  cagaser authored 4 years ago
  
  4b249fde
Aug 24, 2020
- Merge pull request #244 from biowdl/vt · c509ea6a
  van den Berg authored 4 years ago
  
  Add option to ignore masked reference to VT
  Unverified
  
  c509ea6a
- Add closing bracket · fbad1676
  van den Berg authored 4 years ago
  
  fbad1676