Commits · 9541e660ac917a05ba5dc5ad9cd5a5643cdb60a1 · biowdl / tasks

Jun 04, 2019
- fix tabix · 9541e660
  Ruben Vorderman authored 5 years ago
  
  9541e660
- rewrite tabix · d1229d3e
  Ruben Vorderman authored 5 years ago
  
  d1229d3e
- index in the merge step · 7f939c34
  Ruben Vorderman authored 5 years ago
  
  7f939c34
- some additions · 77cff7b2
  Ruben Vorderman authored 5 years ago
  
  77cff7b2
- make samtools suitable for containers · 76f190c8
  Ruben Vorderman authored 5 years ago
  
  76f190c8
May 29, 2019
- make sure dir exists · 135c6dbc
  Ruben Vorderman authored 5 years ago
  
  135c6dbc
- check with bash container · 402af70c
  Ruben Vorderman authored 5 years ago
  
  402af70c
- Merge pull request #109 from biowdl/md5sums · 65af2ff6
  Ruben Vorderman authored 5 years ago
  
  md5sums should be Strings not Files
  65af2ff6
May 27, 2019
- Merge branch 'develop' into md5sums · ad48a623
  Cats authored 5 years ago
  
  ad48a623
May 20, 2019
- md5sums should be Strings not Files · 90b72efa
  Cats authored 5 years ago
  
  90b72efa
- add year to license · d8e02994
  Ruben Vorderman authored 5 years ago
  
  d8e02994
May 15, 2019
- Merge pull request #108 from biowdl/BIOWDL-232 · 6603d50f
  Ruben Vorderman authored 5 years ago
  
  Higher memory multipliers
  6603d50f
- increase memory multiplier · 041f157e
  Ruben Vorderman authored 5 years ago
  
  041f157e
May 13, 2019
- increase memory for vcf · b8914ee5
  Ruben Vorderman authored 5 years ago
  
  b8914ee5
- higher memory multiplier for fastqsplitter · 3bade33d
  Ruben Vorderman authored 5 years ago
  
  3bade33d
May 09, 2019
- Merge pull request #107 from biowdl/BIOWDL-232 · 204161df
  Ruben Vorderman authored 5 years ago
  
  Allow for unified adapters and contaminations input and set a default.
  204161df
- fix logic and formatting · 66c50d9b
  Ruben Vorderman authored 5 years ago
  
  66c50d9b
- correctify · 4f983c44
  Ruben Vorderman authored 5 years ago
  
  4f983c44
- newer version of cutadapt · 0cf0c068
  Ruben Vorderman authored 5 years ago
  
  0cf0c068
- allow for single adapter and contaminations input in cutadapt · d993500b
  Ruben Vorderman authored 5 years ago
  
  d993500b
May 07, 2019
- Merge pull request #106 from biowdl/BIOWDL-232 · c59afe49
  Ruben Vorderman authored 5 years ago
  
  Do not extract fastqc zip by default.
  c59afe49
- correct outputs · 42da877d
  Ruben Vorderman authored 5 years ago
  
  42da877d
- set extract default to false · b2918a10
  Ruben Vorderman authored 5 years ago
  
  b2918a10
May 06, 2019
- setting next version · b0b1ae2a
  Ruben Vorderman authored 5 years ago
  
  b0b1ae2a
- add scripts submodule · 53dbf148
  Ruben Vorderman authored 5 years ago
  
  View commits for tag v0.3 v0.3
  
  53dbf148
Apr 23, 2019
- Merge pull request #105 from biowdl/collect_columns · dc8b2eed
  Cats authored 5 years ago
  
  add Collect columns task
  dc8b2eed
Apr 15, 2019
- make featureAttribute optional in collect-columns · e3f5352b
  Cats authored 6 years ago
  
  e3f5352b
- add collect-columns · ab93e5a8
  Cats authored 6 years ago
  
  ab93e5a8
Apr 08, 2019
- Merge pull request #103 from biowdl/small_fixes · 0ac16be7
  Cats authored 6 years ago
  
  small fixes
  0ac16be7
Apr 05, 2019
- reduce memory for GetConfiguration · 6a0abb57
  Cats authored 6 years ago
  
  6a0abb57
Apr 04, 2019
- small fixes · 4687394a
  Cats authored 6 years ago
  
  4687394a
Mar 29, 2019
- Merge pull request #102 from biowdl/BIOWDL-213 · 72241b6d
  Ruben Vorderman authored 6 years ago
  
  Fixes for containerizing germline-dna pipeline
  72241b6d
- Merge remote-tracking branch 'origin/develop' into BIOWDL-213 · 2d4e6017
  Ruben Vorderman authored 6 years ago
  
  2d4e6017
Mar 25, 2019
- Merge pull request #101 from biowdl/fix_vardict_threads · 43129743
  Ruben Vorderman authored 6 years ago
  
  Set additional cpus for vardict
  43129743
Mar 21, 2019
- fix container string · 4b87337d
  Ruben Vorderman authored 6 years ago
  
  4b87337d
- remove linking · 39c6043d
  Ruben Vorderman authored 6 years ago
  
  39c6043d
- add dockerTag · 163b0cc4
  Ruben Vorderman authored 6 years ago
  
  163b0cc4
- correct the version · b6431b36
  Ruben Vorderman authored 6 years ago
  
  b6431b36
- add threads input for vardict · 5add5ff9
  Cats authored 6 years ago
  
  5add5ff9
Mar 20, 2019
- simplify and containerize bwa · 1f117c45
  Cats authored 6 years ago
  
  1f117c45