Commits · 94332596940fbf7d0892b16af593c3fca956b206 · biowdl / tasks

Mar 11, 2020
- add parameter_meta · 94332596
  Ruben Vorderman authored 5 years ago
  
  94332596
- update changelog · f23b631b
  Ruben Vorderman authored 5 years ago
  
  f23b631b
- Merge commit '328a1d43 ' into refconfidence · cc0bbb1c
  Ruben Vorderman authored 5 years ago
  
  cc0bbb1c
- add RefConfidence mode · 328a1d43
  Ruben Vorderman authored 5 years ago
  
  328a1d43
Mar 09, 2020
- Merge pull request #193 from biowdl/haplotypecalleroutputmode · 596ce9f8
  Ruben Vorderman authored 5 years ago
  
  add output mode to haplotypecaller
  Unverified
  
  596ce9f8
- add output mode to haplotypecaller · efa12219
  Ruben Vorderman authored 5 years ago
  
  efa12219
Mar 03, 2020
- add rtgMem parameter_meta · 414d8f3c
  Ruben Vorderman authored 5 years ago
  
  414d8f3c
- Merge pull request #192 from biowdl/KG-511 · 5c1d64b4
  Ruben Vorderman authored 5 years ago
  
  Adding tasks for clinical validation.
  Unverified
  
  5c1d64b4
- address review comments · bb689668
  Ruben Vorderman authored 5 years ago
  
  bb689668
Feb 25, 2020
- increase default memory · 8e1438b6
  Ruben Vorderman authored 5 years ago
  
  8e1438b6
- change default mem requirements · 57ac6f2c
  Ruben Vorderman authored 5 years ago
  
  57ac6f2c
- update changelog · df513d10
  Ruben Vorderman authored 5 years ago
  
  df513d10
- add allStats output · 474c1d39
  Ruben Vorderman authored 5 years ago
  
  474c1d39
- update tasks · efc225af
  Ruben Vorderman authored 5 years ago
  
  efc225af
Feb 24, 2020
- add bedregions input · 0023ed3e
  Ruben Vorderman authored 5 years ago
  
  0023ed3e
- add selectvariants tasks · 996a5fef
  Ruben Vorderman authored 5 years ago
  
  996a5fef
- add rtg vcfeval and rtg format · 1166aafc
  Ruben Vorderman authored 5 years ago
  
  1166aafc
- add gatk variantfiltration task · accc4662
  Ruben Vorderman authored 5 years ago
  
  accc4662
Feb 20, 2020
- Merge pull request #190 from biowdl/fixbwakit · b5b9f57c
  Ruben Vorderman authored 5 years ago
  
  Fix error in bwakit where the output directory was not created.
  Unverified
  
  b5b9f57c
- Merge remote-tracking branch 'origin/develop' into fixbwakit · 25b4212d
  Ruben Vorderman authored 5 years ago
  
  25b4212d
- add changelog · 1e66cc02
  Ruben Vorderman authored 5 years ago
  
  1e66cc02
- ensure output dir exists · 368d1264
  Ruben Vorderman authored 5 years ago
  
  368d1264
Feb 13, 2020
- Merge pull request #189 from biowdl/fixCleverMeta · 863bd600
  Cats authored 5 years ago
  
  fix clever parameter_meta
  Unverified
  
  863bd600
- fix clever parameter_meta · c6b9a8e4
  cedrick authored 5 years ago
  
  c6b9a8e4
- Merge pull request #188 from biowdl/addVT · d76e8fe6
  Cats authored 5 years ago
  
  Add vt
  Unverified
  
  d76e8fe6
- modify copyright year in vt.wdl · 4642c1c7
  cedrick authored 5 years ago
  
  4642c1c7
- update submodule tasks · 2379e76a
  cedrick authored 5 years ago
  
  2379e76a
- update CHANGELOG.md · 47bcc7b8
  cedrick authored 5 years ago
  
  47bcc7b8
- minor fix · 568df5ae
  cedrick authored 5 years ago
  
  568df5ae
- Merge pull request #116 from biowdl/add_sv_tasks · b7fe370d
  Cats authored 5 years ago
  
  Add sv tasks
  Unverified
  
  b7fe370d
- add paramter_meta · e2b0285e
  cedrick authored 5 years ago
  
  e2b0285e
- change cleveroutputpath category from required to common · 06d37a72
  cedrick authored 5 years ago
  
  06d37a72
- modify outputPath category from required to common · 19736000
  cedrick authored 5 years ago
  
  19736000
- Merge branch 'develop' into add_sv_tasks · 44e39a31
  cedrick authored 5 years ago
  
  44e39a31
- add default outputpath · ec719411
  cedrick authored 5 years ago
  
  ec719411
- add vt task · ba638b55
  cedrick authored 5 years ago
  
  ba638b55
Feb 12, 2020
- remove outputPathBamIndex as input · 835bea58
  cedrick authored 5 years ago
  
  835bea58
- add default outputPath · 91a5cdd2
  cedrick authored 5 years ago
  
  91a5cdd2
- Merge pull request #187 from biowdl/DavyCats-patch-1 · b9ad171e
  Ruben Vorderman authored 5 years ago
  
  fix CombineVariants docker image
  Unverified
  
  b9ad171e
- fix parameter_meta · 64d7837d
  cedrick authored 5 years ago
  
  64d7837d