Commits · 8c40b9e575ce18048782929d778376a6eccdf611 · biowdl / tasks

Jul 23, 2018
- seqtk to 1.0 · 8c40b9e5
  Ruben Vorderman authored 6 years ago
  
  8c40b9e5
- samtools to 1.0 · 3c7c7a38
  Ruben Vorderman authored 6 years ago
  
  3c7c7a38
- ignore downloaded jars for checking · 6b79eb1d
  Ruben Vorderman authored 6 years ago
  
  6b79eb1d
- improved testing script · 18ed34bd
  Ruben Vorderman authored 6 years ago
  
  18ed34bd
- picard to 1.0 · 58c0da16
  Ruben Vorderman authored 6 years ago
  
  58c0da16
- ncbi to 1.0 · 94719df0
  Ruben Vorderman authored 6 years ago
  
  94719df0
- mergecounts to 1.0 · ab88bc1a
  Ruben Vorderman authored 6 years ago
  
  ab88bc1a
- macs2 and htseq.wdl to 1.0 · 1dbfac51
  Ruben Vorderman authored 6 years ago
  
  1dbfac51
- gatk to 1.0 · 0e6bde49
  Ruben Vorderman authored 6 years ago
  
  0e6bde49
- flash to 1.0 · 9249f3e2
  Ruben Vorderman authored 6 years ago
  
  9249f3e2
- fastqc to 1.0 · 39cbad54
  Ruben Vorderman authored 6 years ago
  
  39cbad54
- cutadapt to 1.0 · e286ef66
  Ruben Vorderman authored 6 years ago
  
  e286ef66
- common to 1.0 · c9c2fc44
  Ruben Vorderman authored 6 years ago
  
  c9c2fc44
- centrifuge to 1.0 · 37f0afb7
  Ruben Vorderman authored 6 years ago
  
  37f0afb7
- bwa.wdl to 1.0 · 1c1f8955
  Ruben Vorderman authored 6 years ago
  
  1c1f8955
- new style variable things · 2de46d0a
  Ruben Vorderman authored 6 years ago
  
  2de46d0a
- biopet.wdl to 1.0 · 758de0e5
  Ruben Vorderman authored 6 years ago
  
  758de0e5
- bioconda.wdl to 1.0 · a748dafa
  Ruben Vorderman authored 6 years ago
  
  a748dafa
Jul 19, 2018
- Merge pull request #32 from biowdl/BIOWDL-40 · a8523586
  Ruben Vorderman authored 6 years ago
  
  style changes and adds task to check file md5
  Unverified
  
  a8523586
- Merge branch 'develop' into BIOWDL-40 · cda858f9
  Cats authored 6 years ago
  
  Unverified
  
  cda858f9
Jul 18, 2018
- Merge pull request #30 from biowdl/BIOWDL-51 · 45027f45
  Cats authored 6 years ago
  
  add picard metrics tools
  Unverified
  
  45027f45
- Merge branch 'develop' into BIOWDL-51 · 97437ddf
  Ruben Vorderman authored 6 years ago
  
  Unverified
  
  97437ddf
- Merge pull request #31 from biowdl/BIOWDL-42 · 0f8d23d7
  Ruben Vorderman authored 6 years ago
  
  add validatevcf and validateannotation
  Unverified
  
  0f8d23d7
- style · e1991bae
  Cats authored 6 years ago
  
  e1991bae
- add validatevcf and validateannotation · a00d1fdd
  Cats authored 6 years ago
  
  a00d1fdd
Jul 17, 2018
- Merge branch 'BIOWDL-51' into BIOWDL-40 · 7cbc807d
  Cats authored 6 years ago
  
  7cbc807d
- Merge branch 'develop' into BIOWDL-51 · d81eed41
  Cats authored 6 years ago
  
  Unverified
  
  d81eed41
Jul 16, 2018
- Merge pull request #29 from biowdl/macs2 · 9081f0d7
  Cats authored 6 years ago
  
  Macs2
  Unverified
  
  9081f0d7
- Merge branch 'develop' into macs2 · 903ce915
  Cats authored 6 years ago
  
  Unverified
  
  903ce915
- another missing '.' · c5832982
  Cats authored 6 years ago
  
  c5832982
- add missing '.' · e0027a60
  Cats authored 6 years ago
  
  e0027a60
- Remove quotation marks from boolean value · 2c5b6d2a
  Moustakas authored 6 years ago
  
  2c5b6d2a
- Add boolean argument --nomodel from macs2 · 79d5fda3
  Moustakas authored 6 years ago
  
  79d5fda3
- add picard metrics tools · e2d48b9d
  Cats authored 6 years ago
  
  e2d48b9d
Jul 13, 2018
- add CheckFileMD5 · e3439525
  Cats authored 6 years ago
  
  e3439525
- style · f24500d1
  Cats authored 6 years ago
  
  f24500d1
- style · 9b9fd26a
  Cats authored 6 years ago
  
  9b9fd26a
Jul 11, 2018
- Merge pull request #28 from biowdl/BIOWDL-56 · 26e020d6
  Peter van 't Hof authored 6 years ago
  
  Added precommand to ExtractAdaptersFastqc task
  Unverified
  
  26e020d6
- Added precommand to ExtractAdaptersFastqc task · 76d5fdd5
  Pappas authored 6 years ago
  
  76d5fdd5
Jul 03, 2018
- Merge pull request #27 from biowdl/macs2 · de0b9120
  Cats authored 6 years ago
  
  Fix typo in command
  Unverified
  
  de0b9120