Commits · 72241b6d7bfaca909a915da3801ac5d01ac69313 · biowdl / tasks

Mar 29, 2019
- Merge pull request #102 from biowdl/BIOWDL-213 · 72241b6d
  Ruben Vorderman authored 6 years ago
  
  Fixes for containerizing germline-dna pipeline
  72241b6d
- Merge remote-tracking branch 'origin/develop' into BIOWDL-213 · 2d4e6017
  Ruben Vorderman authored 6 years ago
  
  2d4e6017
Mar 25, 2019
- Merge pull request #101 from biowdl/fix_vardict_threads · 43129743
  Ruben Vorderman authored 6 years ago
  
  Set additional cpus for vardict
  43129743
Mar 21, 2019
- fix container string · 4b87337d
  Ruben Vorderman authored 6 years ago
  
  4b87337d
- remove linking · 39c6043d
  Ruben Vorderman authored 6 years ago
  
  39c6043d
- add dockerTag · 163b0cc4
  Ruben Vorderman authored 6 years ago
  
  163b0cc4
- correct the version · b6431b36
  Ruben Vorderman authored 6 years ago
  
  b6431b36
- add threads input for vardict · 5add5ff9
  Cats authored 6 years ago
  
  5add5ff9
Mar 20, 2019
- simplify and containerize bwa · 1f117c45
  Cats authored 6 years ago
  
  1f117c45
Mar 19, 2019
- Merge pull request #100 from biowdl/bamBasedScatter · 2b093b83
  Ruben Vorderman authored 6 years ago
  
  add bamFile input to scatterregions
  2b093b83
- Merge branch 'develop' into bamBasedScatter · 811ed1ec
  Ruben Vorderman authored 6 years ago
  
  811ed1ec
Mar 18, 2019
- add bamIndex input for scatterregions · 09847a39
  Cats authored 6 years ago
  
  09847a39
- add missing space · 462872a3
  Cats authored 6 years ago
  
  462872a3
- add bamFile input to scatterregions · 07df9722
  Cats authored 6 years ago
  
  07df9722
Mar 13, 2019
- Merge pull request #99 from biowdl/add_copy · 8986cd5d
  Ruben Vorderman authored 6 years ago
  
  Add copy
  8986cd5d
Mar 12, 2019
- memory adjustments · 93e321ee
  Cats authored 6 years ago
  
  93e321ee
Mar 08, 2019
- R locale workaround · 182458b8
  Cats authored 6 years ago
  
  182458b8
- add copy task · be39814e
  Cats authored 6 years ago
  
  be39814e
Mar 07, 2019
- fix picard mergeVcf memeory input · c65f20ea
  Cats authored 6 years ago
  
  c65f20ea
Mar 05, 2019
- Merge pull request #98 from biowdl/BIOWDL-214 · 67bbaeda
  Ruben Vorderman authored 6 years ago
  
  docker added for somatic variantcallers
  67bbaeda
- memory adjustments · 35751a5f
  Cats authored 6 years ago
  
  35751a5f
Mar 01, 2019
- docker added for somatic variantcallers · dd97cb46
  Cats authored 6 years ago
  
  dd97cb46
Feb 26, 2019
- Merge pull request #97 from biowdl/BIOWDL-208 · 34d0d144
  Ruben Vorderman authored 6 years ago
  
  Containerize tasks for RNA-seq
  34d0d144
Feb 25, 2019
- fix multiqc · c3c483de
  Ruben Vorderman authored 6 years ago
  
  c3c483de
- remove precommand · e6e88a0f
  Ruben Vorderman authored 6 years ago
  
  e6e88a0f
- dockerize multiqc · 7a913a26
  Ruben Vorderman authored 6 years ago
  
  7a913a26
- dockerize gffcompare · f5ba74d4
  Ruben Vorderman authored 6 years ago
  
  f5ba74d4
- dockerize vcfstats · 81717966
  Ruben Vorderman authored 6 years ago
  
  81717966
- use bash container · d9835ef4
  Ruben Vorderman authored 6 years ago
  
  d9835ef4
- validatevcf to docker · c85b0974
  Ruben Vorderman authored 6 years ago
  
  c85b0974
- dockerize validate tasks · 2e357ab1
  Ruben Vorderman authored 6 years ago
  
  2e357ab1
- more explanation · 64a0c979
  Ruben Vorderman authored 6 years ago
  
  64a0c979
- Merge pull request #94 from biowdl/BIOWDL-204 · fd317ce7
  Ruben Vorderman authored 6 years ago
  
  Containerize gffread and cpat
  fd317ce7
- remove pipefail · bbb63b8a
  Ruben Vorderman authored 6 years ago
  
  bbb63b8a
- update tag · 87d20bb3
  Ruben Vorderman authored 6 years ago
  
  87d20bb3
- Merge remote-tracking branch 'origin/develop' into BIOWDL-204 · 1bd0a905
  Ruben Vorderman authored 6 years ago
  
  1bd0a905
- Merge pull request #96 from biowdl/python-slim · 59ffa323
  Ruben Vorderman authored 6 years ago
  
  Work with python slim containers to perform python script tasks.
  59ffa323
- update comment · 2dae6bd4
  Ruben Vorderman authored 6 years ago
  
  2dae6bd4
- Merge remote-tracking branch 'origin/develop' into python-slim · 7fbab1fc
  Ruben Vorderman authored 6 years ago
  
  7fbab1fc
- python containers added · 1dfced0d
  Ruben Vorderman authored 6 years ago
  
  1dfced0d