Commits · 6a0df09174529789a4bb6651ae992d0758d6a7eb · biowdl / tasks

Jul 26, 2018
- add vcfStats and Mutect2 · 6a0df091
  Cats authored 6 years ago
  
  6a0df091
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
- reduce task complexities · 21643dbd
  Cats authored 6 years ago
  
  21643dbd
Jul 23, 2018
- style · 70216915
  Cats authored 6 years ago
  
  70216915
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- typo · e4d6e0e3
  Cats authored 6 years ago
  
  e4d6e0e3
- add index inputs · cbebae76
  Cats authored 6 years ago
  
  cbebae76
- new style variable things · 2de46d0a
  Ruben Vorderman authored 6 years ago
  
  2de46d0a
- add missing spaces in validateannotation · 788e0553
  Cats authored 6 years ago
  
  788e0553
- biopet.wdl to 1.0 · 758de0e5
  Ruben Vorderman authored 6 years ago
  
  758de0e5
- fix missing space after toolcommand · 57079740
  Cats authored 6 years ago
  
  57079740
Jul 18, 2018
- style · e1991bae
  Cats authored 6 years ago
  
  e1991bae
- add validatevcf and validateannotation · a00d1fdd
  Cats authored 6 years ago
  
  a00d1fdd
Jul 11, 2018
- Added precommand to ExtractAdaptersFastqc task · 76d5fdd5
  Pappas authored 6 years ago
  
  76d5fdd5
Jun 20, 2018
- change memory params · 46848563
  Ruben Vorderman authored 6 years ago
  
  46848563
- change memory params · 73b240ec
  Ruben Vorderman authored 6 years ago
  
  73b240ec
- add runtime stuff to validatefastq · 67a9dbfc
  Ruben Vorderman authored 6 years ago
  
  67a9dbfc
Jun 19, 2018
- add stderr · 4382c7b7
  Ruben Vorderman authored 6 years ago
  
  4382c7b7
- add validatefastq · a0de5e64
  Ruben Vorderman authored 6 years ago
  
  a0de5e64
- fix review points · 9253f307
  Ruben Vorderman authored 6 years ago
  
  9253f307
Jun 14, 2018
- fix output file · 3b0baaa5
  Ruben Vorderman authored 6 years ago
  
  3b0baaa5
- more sensible names · eff1af58
  Ruben Vorderman authored 6 years ago
  
  eff1af58
- add output · 43c38d8b
  Ruben Vorderman authored 6 years ago
  
  43c38d8b
- added SeqStat · 9bc3b50a
  Ruben Vorderman authored 6 years ago
  
  9bc3b50a
- toolJar is a file not a string · ffe31f1f
  Ruben Vorderman authored 6 years ago
  
  ffe31f1f
- start on seqstat · 3eef8316
  Ruben Vorderman authored 6 years ago
  
  3eef8316
Jun 13, 2018
- all biopet tools now also usable with conda · 9ca8d3c4
  pjvan_thof authored 6 years ago
  
  9ca8d3c4
- fix conda command SampleConfig · eddcbfff
  Cats authored 6 years ago
  
  eddcbfff
Jun 12, 2018
- Added back toolJar as optional · 25cffcfa
  pjvan_thof authored 6 years ago
  
  25cffcfa
Jun 11, 2018
- Added conda env · 58300734
  Peter van 't Hof authored 6 years ago
  
  58300734
Jun 07, 2018
- fix oversight · ca68fbdc
  Cats authored 6 years ago
  
  ca68fbdc
- fix glob issue · 5fdf6d20
  Cats authored 6 years ago
  
  5fdf6d20
Jun 06, 2018
- fix glob issue · 8caea82e
  Cats authored 6 years ago
  
  8caea82e
Jun 05, 2018
- Various style fixes · fc01ad36
  Pappas authored 6 years ago
  
  fc01ad36
May 30, 2018
- requested changes and memory settings · fb1a2c68
  Cats authored 6 years ago
  
  fb1a2c68
May 29, 2018
- make extractadaptersfastqc conda aware · 5a740c18
  Ruben Vorderman authored 6 years ago
  
  5a740c18
May 28, 2018
- move extractadaptersfastqc to biopet · 32706126
  Ruben Vorderman authored 6 years ago
  
  32706126
May 22, 2018
- expression counting fixes · 67342e03
  Cats authored 6 years ago
  
  67342e03
May 17, 2018
- call caching fixes · 8aaf9153
  Cats authored 6 years ago
  
  8aaf9153
- use stdout() and fix regex · 52a6e6b1
  Cats authored 6 years ago
  
  52a6e6b1