Commits · 5c1625e38ab490e805f8e5a7efc158a1638fad50 · biowdl / tasks

Jun 16, 2020
- Add scatter-regions to changelog · 5c1625e3
  Ruben Vorderman authored 4 years ago
  
  5c1625e3
- resource requirements for multiqc · 7db296e7
  Ruben Vorderman authored 4 years ago
  
  7db296e7
- Merge branch 'BIOWDL-471' of https://github.com/biowdl/tasks into BIOWDL-471 · 889b444d
  Ruben Vorderman authored 4 years ago
  
  889b444d
- Also read reference and dbsnpvcf as part of time estimate · edb371e3
  Ruben Vorderman authored 4 years ago
  
  edb371e3
- 300 minutes per G of input · a5cdc705
  Ruben Vorderman authored 4 years ago
  
  a5cdc705
Jun 15, 2020
- use the same prefix as the biopet-scatterregions tool · 5068af10
  Ruben Vorderman authored 4 years ago
  
  5068af10
- typo · 5f13c04f
  Ruben Vorderman authored 4 years ago
  
  5f13c04f
- Add scatter-regions task · 2cb77beb
  Ruben Vorderman authored 4 years ago
  
  2cb77beb
Jun 10, 2020
- Fix error in star · 8aa27236
  Ruben Vorderman authored 4 years ago
  
  8aa27236
Jun 09, 2020
- Merge remote-tracking branch 'origin' into BIOWDL-471 · 7abaf7ad
  Ruben Vorderman authored 4 years ago
  
  7abaf7ad
- allow for very large scattersizes · 4f31b5fb
  Ruben Vorderman authored 4 years ago
  
  4f31b5fb
- Merge pull request #220 from biowdl/BIOWDL-469 · 2ffa3586
  Ruben Vorderman authored 4 years ago
  
  Add bcftools stats and GATK VariantEval
  Unverified
  
  2ffa3586
Jun 08, 2020
- Remove empty line · a967bf6b
  Ruben Vorderman authored 4 years ago
  
  a967bf6b
- complete parameter_meta for bcf tools · f2c1d5ba
  Ruben Vorderman authored 4 years ago
  
  f2c1d5ba
Jun 05, 2020
- update changelog · 00e1180c
  Ruben Vorderman authored 4 years ago
  
  00e1180c
- fix stats task · 2eca5b51
  Ruben Vorderman authored 4 years ago
  
  2eca5b51
- fix typo and use newer version of GATK · 3eccb5b7
  Ruben Vorderman authored 4 years ago
  
  3eccb5b7
- fix typo · 6e4334c2
  Ruben Vorderman authored 4 years ago
  
  6e4334c2
- Add fastqc change to changelog · 1db21ed6
  Ruben Vorderman authored 4 years ago
  
  1db21ed6
- Add missing \ · 56437e74
  Ruben Vorderman authored 4 years ago
  
  56437e74
- Skip the Perl wrapper and talk to fastq jar directly · a8c2b90a
  Ruben Vorderman authored 4 years ago
  
  a8c2b90a
- try to fix memory · bf614579
  Ruben Vorderman authored 4 years ago
  
  bf614579
Jun 04, 2020
- update star resource requirement · 6d737097
  Ruben Vorderman authored 4 years ago
  
  6d737097
- Tune memory and time requirements for RNA seq · 3261563d
  Ruben Vorderman authored 4 years ago
  
  3261563d
- Add comment · 898e02ee
  Ruben Vorderman authored 4 years ago
  
  898e02ee
- higher margin for rnaseqmetrics · 3605b18e
  Ruben Vorderman authored 4 years ago
  
  3605b18e
Jun 02, 2020
- Take into account index size for star alignment time requirement · b3a80c84
  Ruben Vorderman authored 4 years ago
  
  b3a80c84
May 28, 2020
- add variant eval parameter_meta · c58cf218
  Ruben Vorderman authored 4 years ago
  
  c58cf218
- start on variant eval · 25bb7b38
  Ruben Vorderman authored 4 years ago
  
  25bb7b38
- add dockerimage · 12420e38
  Ruben Vorderman authored 4 years ago
  
  12420e38
- add bcftools stats · 63202c73
  Ruben Vorderman authored 4 years ago
  
  63202c73
May 20, 2020
- add missing parameter_meta · 0211661c
  Cats authored 4 years ago
  
  0211661c
- Merge pull request #219 from biowdl/BIOWDL-464 · d524e6fd
  Ruben Vorderman authored 4 years ago
  
  Fixes for proper MultiQC integration
  Unverified
  
  d524e6fd
- add gffcompare output · a879f1c7
  Ruben Vorderman authored 4 years ago
  
  a879f1c7
May 19, 2020
- Add summaryFilePath parameter_meta · 8aa9d7ea
  Ruben Vorderman authored 4 years ago
  
  8aa9d7ea
- Parameter meta for multiqc updated. Make sure data dir output is always zipped by default. · 6fbe1b7f
  Ruben Vorderman authored 4 years ago
  
  6fbe1b7f
- Merge branch 'BIOWDL-464' of https://github.com/biowdl/tasks into BIOWDL-464 · ce22935b
  Ruben Vorderman authored 4 years ago
  
  ce22935b
- cleanup multiqc. Add comments on how it works · d3832132
  Ruben Vorderman authored 4 years ago
  
  d3832132
- Update changelog with changes and to a newer version · 408f06c6
  Ruben Vorderman authored 4 years ago
  
  408f06c6
- Merge origin/develop into BIOWDL-464 · b0b19669
  Ruben Vorderman authored 4 years ago
  
  b0b19669