Commits · 441890ee663cfe623c13f0f5b290a5cc6d6524da · biowdl / tasks

Apr 21, 2020
- Address comments. · 441890ee
  JasperBoom authored 5 years ago
  
  441890ee
- Update documentation. · 90c0270d
  JasperBoom authored 5 years ago
  
  90c0270d
- Address GitHub comments. · e3890adf
  JasperBoom authored 5 years ago
  
  e3890adf
Apr 20, 2020
- Fix travis error. · 7627c314
  JasperBoom authored 5 years ago
  
  7627c314
- Add new tasks to samtools and picard. · 117bde45
  JasperBoom authored 5 years ago
  
  117bde45
Mar 19, 2020
- remove unused includeHeader · 0e668512
  Ruben Vorderman authored 5 years ago
  
  0e668512
- rename outputBAM back to outputBam, remove boolean · 4154cee8
  Ruben Vorderman authored 5 years ago
  
  4154cee8
Feb 13, 2020
- modify outputPath category from required to common · 19736000
  cedrick authored 5 years ago
  
  19736000
Feb 12, 2020
- remove outputPathBamIndex as input · 835bea58
  cedrick authored 5 years ago
  
  835bea58
- fix parameter_meta · 3ec2d054
  cedrick authored 5 years ago
  
  3ec2d054
Feb 11, 2020
- set optional booleans to false · 444cde04
  cagaser authored 5 years ago
  
  444cde04
- add license headers · 407435d8
  Ruben Vorderman authored 5 years ago
  
  407435d8
- add missing parameter_meta · 9ec5ab9d
  cedrick authored 5 years ago
  
  9ec5ab9d
- Reorder some stuff · bb0a7b9a
  JasperBoom authored 5 years ago
  
  bb0a7b9a
Feb 10, 2020
- removed bam.bai extension in samtools, changed in to just .bai · 14de39c5
  cedrick authored 5 years ago
  
  14de39c5
- Update samtools.wdl · 4a442607
  Cedrick Agaser authored 5 years ago
  
  Gave Boolean a default value Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  4a442607
- Update samtools.wdl · 953c9d08
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  953c9d08
Feb 07, 2020
- fix some sytax styles · 094f4a7a
  cagaser authored 5 years ago
  
  094f4a7a
- fix writings according to bioWDL guidelines · 2d90e2ef
  cagaser authored 5 years ago
  
  2d90e2ef
- change outputBam to ouputBAM under output parameter · 30a692a5
  cagaser authored 5 years ago
  
  30a692a5
Feb 06, 2020
- add FilterShortReadsBam · 9a3eb2b0
  cagaser authored 5 years ago
  
  9a3eb2b0
Jan 10, 2020
- add parameter_meta to samtools · 7b92c9f5
  Cats authored 5 years ago
  
  7b92c9f5
Dec 10, 2019
- fix SC2046 · 86182571
  Cats authored 5 years ago
  
  86182571
Oct 28, 2019
- fix samtools index · 60c48b64
  Ruben Vorderman authored 5 years ago
  
  60c48b64
Oct 02, 2019
- memory Int -> String part 2 · 1a455271
  Cats authored 5 years ago
  
  1a455271
Sep 11, 2019
- processed review of Davy. · f037c38a
  Mei authored 5 years ago
  
  f037c38a
- support name based sorting in smallRNA pipeline · 33f53d10
  Mei authored 5 years ago
  
  33f53d10
Jul 17, 2019
- samtools.wdl: add include header option to samtools view · dc1f66b5
  cagaser authored 5 years ago
  
  dc1f66b5
Jul 09, 2019
- some changes · 60ebaba0
  Ruben Vorderman authored 5 years ago
  
  60ebaba0
Jul 08, 2019
- small fixes · 3ec3f6b1
  Ruben Vorderman authored 5 years ago
  
  3ec3f6b1
Jul 03, 2019
- fix · 68061dfd
  Ruben Vorderman authored 5 years ago
  
  68061dfd
- fix output bam · 0c655aeb
  Ruben Vorderman authored 5 years ago
  
  0c655aeb
- valid wdl · b025aec9
  Ruben Vorderman authored 5 years ago
  
  b025aec9
- fix samtools · a5010d88
  Ruben Vorderman authored 5 years ago
  
  a5010d88
- improve indexing · dde60f45
  Ruben Vorderman authored 5 years ago
  
  dde60f45
Jul 02, 2019
- universal indexing · a558d5bf
  Ruben Vorderman authored 5 years ago
  
  a558d5bf
Jun 26, 2019
- make sure dirs exist · ecce2221
  Ruben Vorderman authored 5 years ago
  
  ecce2221
Jun 24, 2019
- dockerImage for samtools · 8e8f9009
  Ruben Vorderman authored 5 years ago
  
  8e8f9009
Jun 04, 2019
- destroy another struct · 2afe2c05
  Ruben Vorderman authored 5 years ago
  
  2afe2c05
- fix tabix · 13ce0fb1
  Ruben Vorderman authored 5 years ago
  
  13ce0fb1