Commits · 3f76851071e3b6019ede7455d91edf97534b261e · biowdl / tasks

Sep 07, 2020
- Merge branch 'develop' into optional-indexing · 3f768510
  Cedrick Agaser authored 4 years ago
  
  Unverified
  
  3f768510
- made output extension depends on compression level · 5781179d
  cagaser authored 4 years ago
  
  5781179d
- make bcftools indexing optional · 7bc3c58d
  cagaser authored 4 years ago
  
  7bc3c58d
- Merge pull request #246 from biowdl/update-survivor · 748ed63b
  Cats authored 4 years ago
  
  Update survivor
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  748ed63b
Sep 04, 2020
- update CHANGELOG · f1209328
  cagaser authored 4 years ago
  
  f1209328
- replace binary digits to boolean · 4b249fde
  cagaser authored 4 years ago
  
  4b249fde
Aug 24, 2020
- Merge pull request #244 from biowdl/vt · c509ea6a
  van den Berg authored 4 years ago
  
  Add option to ignore masked reference to VT
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  c509ea6a
- Add closing bracket · fbad1676
  van den Berg authored 4 years ago
  
  fbad1676
- Update changelog · 47651a09
  van den Berg authored 4 years ago
  
  47651a09
- Add option to ignore masked reference · a6c34878
  van den Berg authored 4 years ago
  
  a6c34878
Aug 17, 2020
- Update submodules. · 3327f388
  JasperBoom authored 4 years ago
  
  3327f388
- Merge pull request #243 from biowdl/bcftools_setid · 2f796b63
  Cedrick Agaser authored 4 years ago
  
  Bcftools: added annotation and sorting
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  2f796b63
Aug 14, 2020
- update changelog · 4664f90c
  cagaser authored 4 years ago
  
  4664f90c
- add output {} · f07a59ae
  cagaser authored 4 years ago
  
  f07a59ae
- add bcftools sort · 1241b96f
  cagaser authored 4 years ago
  
  1241b96f
- small fix: change vcf to bcf · df6fe2df
  cagaser authored 4 years ago
  
  df6fe2df
- add bcftools annotate · 31b21e1e
  cagaser authored 4 years ago
  
  31b21e1e
- Merge pull request #242 from biowdl/gridss · 6d39e056
  Ruben Vorderman authored 4 years ago
  
  add parameter_meta for SVcalling.gridss.jvmHeapSizeGb
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  6d39e056
- Merge branch 'develop' into gridss · b6a2818e
  Cedrick Agaser authored 4 years ago
  
  Unverified
  
  b6a2818e
- small fix · 1e8155c2
  cagaser authored 4 years ago
  
  1e8155c2
- add parameter_meta for SVcalling.gridss.jvmHeapSizeGb · e941b853
  cagaser authored 4 years ago
  
  e941b853
Aug 13, 2020
- Merge pull request #240 from biowdl/BIOWDL-487 · c62deb1f
  Jasper authored 4 years ago
  
  BIOWDL-487: Remove globs from lima outputs.
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  c62deb1f
- Merge branch 'develop' into BIOWDL-487 · 019f7f5b
  Jasper authored 4 years ago
  
  Unverified
  
  019f7f5b
- Merge pull request #241 from biowdl/gridss · 59e542a0
  Cedrick Agaser authored 4 years ago
  
  Gridss
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  59e542a0
- change default jvmHeapSizeGb from 1G to 30G · b654fee3
  cagaser authored 4 years ago
  
  b654fee3
- update gridss.wdl · 8b378196
  cagaser authored 4 years ago
  
  8b378196
- Rename input files. · ac3ee595
  JasperBoom authored 4 years ago
  
  ac3ee595
- Merge branch 'develop' into gridss · 29482a30
  Cedrick Agaser authored 4 years ago
  
  Unverified
  
  29482a30
- update task/CHANGELOG · 9bfe4ebf
  cagaser authored 4 years ago
  
  9bfe4ebf
- update gridss: add --jvmheap parameter · a4af699b
  cagaser authored 4 years ago
  
  a4af699b
Aug 11, 2020
- Merge branch 'develop' into BIOWDL-487 · ae8ec634
  Jasper authored 4 years ago
  
  Unverified
  
  ae8ec634
- Change inputs to arrays. · af73c539
  JasperBoom authored 4 years ago
  
  af73c539
- Change lima outputs. · 01df29ba
  JasperBoom authored 4 years ago
  
  01df29ba
- Merge pull request #234 from biowdl/BIOWDL-488 · cce6b32f
  Ruben Vorderman authored 4 years ago
  
  Add bwa-mem2 task.
  Unverified
  
  cce6b32f
- Update CHANGELOG.md · 48351b26
  Ruben Vorderman authored 4 years ago
  
  Unverified
  
  48351b26
- Merge branch 'develop' into BIOWDL-488 · eb04355b
  Ruben Vorderman authored 4 years ago
  
  Unverified
  
  eb04355b
- Merge branch 'develop' into BIOWDL-487 · 16046798
  Jasper authored 4 years ago
  
  Unverified
  
  16046798
- Fix index localization. · 710cb796
  JasperBoom authored 4 years ago
  
  710cb796
- Merge pull request #236 from biowdl/gridss · 2fbdf6aa
  Cedrick Agaser authored 4 years ago
  
  add gridss task
  Unverified
  
  2fbdf6aa
- update CHANGELOG · 10236b50
  Cats authored 4 years ago
  
  10236b50