Commits · 2ec5b8e3a4d2aca5d6c5c74c1a439a01ad9997e2 · biowdl / tasks

Jun 30, 2020
- fix samtools merge · 2ec5b8e3
  Ruben Vorderman authored 4 years ago
  
  2ec5b8e3
- Add threads to samtools · e3ba9aa0
  Ruben Vorderman authored 4 years ago
  
  e3ba9aa0
Jun 29, 2020
- correct additional threads · b81efca4
  Ruben Vorderman authored 4 years ago
  
  b81efca4
Jun 26, 2020
- Increase time estimates for sort tasks · ddae5764
  Ruben Vorderman authored 4 years ago
  
  ddae5764
Jun 24, 2020
- add threads on index as well · 45ffa553
  Ruben Vorderman authored 4 years ago
  
  45ffa553
- Make sure samtools uses memory · 99647123
  Ruben Vorderman authored 4 years ago
  
  99647123
Jun 22, 2020
- Update samtools sort to also index · 0c9ba9ae
  Ruben Vorderman authored 4 years ago
  
  0c9ba9ae
May 07, 2020
- fix task order samtools and remove duplicate task · ac71e415
  Cats authored 4 years ago
  
  ac71e415
- fix samtools sort · 1a90d56f
  Cats authored 4 years ago
  
  1a90d56f
May 06, 2020
- various changes · c33f00ed
  Cats authored 4 years ago
  
  c33f00ed
- time_minutes! · 84ba1ef7
  Cats authored 4 years ago
  
  84ba1ef7
Apr 28, 2020
- Fix quotations in samtools sort. · d9265c31
  JasperBoom authored 4 years ago
  
  d9265c31
Apr 21, 2020
- Fix travis error. · c03c5562
  JasperBoom authored 4 years ago
  
  c03c5562
- Reinstate symlink. · a80da1d9
  JasperBoom authored 4 years ago
  
  a80da1d9
- Address comments. · 441890ee
  JasperBoom authored 4 years ago
  
  441890ee
- Update documentation. · 90c0270d
  JasperBoom authored 4 years ago
  
  90c0270d
- Address GitHub comments. · e3890adf
  JasperBoom authored 4 years ago
  
  e3890adf
Apr 20, 2020
- Fix travis error. · 7627c314
  JasperBoom authored 4 years ago
  
  7627c314
- Add new tasks to samtools and picard. · 117bde45
  JasperBoom authored 4 years ago
  
  117bde45
Apr 08, 2020
- even more time_minutes · 605bba8d
  Cats authored 5 years ago
  
  605bba8d
Apr 07, 2020
- time_minutes · 1e71e46d
  Cats authored 5 years ago
  
  1e71e46d
Apr 06, 2020
- add time_minutes part II · 2c9810f1
  Cats authored 5 years ago
  
  2c9810f1
Mar 19, 2020
- remove unused includeHeader · 0e668512
  Ruben Vorderman authored 5 years ago
  
  0e668512
- rename outputBAM back to outputBam, remove boolean · 4154cee8
  Ruben Vorderman authored 5 years ago
  
  4154cee8
Feb 13, 2020
- modify outputPath category from required to common · 19736000
  cedrick authored 5 years ago
  
  19736000
Feb 12, 2020
- remove outputPathBamIndex as input · 835bea58
  cedrick authored 5 years ago
  
  835bea58
- fix parameter_meta · 3ec2d054
  cedrick authored 5 years ago
  
  3ec2d054
Feb 11, 2020
- set optional booleans to false · 444cde04
  cagaser authored 5 years ago
  
  444cde04
- add license headers · 407435d8
  Ruben Vorderman authored 5 years ago
  
  407435d8
- add missing parameter_meta · 9ec5ab9d
  cedrick authored 5 years ago
  
  9ec5ab9d
- Reorder some stuff · bb0a7b9a
  JasperBoom authored 5 years ago
  
  bb0a7b9a
Feb 10, 2020
- removed bam.bai extension in samtools, changed in to just .bai · 14de39c5
  cedrick authored 5 years ago
  
  14de39c5
- Update samtools.wdl · 4a442607
  Cedrick Agaser authored 5 years ago
  
  Gave Boolean a default value Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  4a442607
- Update samtools.wdl · 953c9d08
  Cedrick Agaser authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  953c9d08
Feb 07, 2020
- fix some sytax styles · 094f4a7a
  cagaser authored 5 years ago
  
  094f4a7a
- fix writings according to bioWDL guidelines · 2d90e2ef
  cagaser authored 5 years ago
  
  2d90e2ef
- change outputBam to ouputBAM under output parameter · 30a692a5
  cagaser authored 5 years ago
  
  30a692a5
Feb 06, 2020
- add FilterShortReadsBam · 9a3eb2b0
  cagaser authored 5 years ago
  
  9a3eb2b0
Jan 10, 2020
- add parameter_meta to samtools · 7b92c9f5
  Cats authored 5 years ago
  
  7b92c9f5
Dec 10, 2019
- fix SC2046 · 86182571
  Cats authored 5 years ago
  
  86182571