Commits · 15c960d2beb3423b1608b3ddf3479808e991218c · biowdl / tasks

Jul 22, 2020
- update changelog · 15c960d2
  Ruben Vorderman authored 4 years ago
  
  15c960d2
- correct memory selection · f6bf488f
  Ruben Vorderman authored 4 years ago
  
  f6bf488f
- Bring changes to hisat2 too · ccbb50c1
  Ruben Vorderman authored 4 years ago
  
  ccbb50c1
- Merge branch 'develop' into bwasortthreads · 34df25d9
  Ruben Vorderman authored 4 years ago
  
  34df25d9
- Merge pull request #232 from biowdl/BIOWDL-487 · 46f90dc3
  Jasper authored 4 years ago
  
  BIOWDL-487: Update output names for the first set of tasks.
  Unverified
  
  46f90dc3
- Update CHANGELOG. · fd4e8619
  JasperBoom authored 4 years ago
  
  fd4e8619
- Fix tests. · d8a159f3
  JasperBoom authored 4 years ago
  
  d8a159f3
- Update CHANGELOG. · 5010738c
  JasperBoom authored 4 years ago
  
  5010738c
- Fix tests. · fe7b8a1e
  JasperBoom authored 4 years ago
  
  fe7b8a1e
- Fix some input naming. · 5e572ffc
  JasperBoom authored 4 years ago
  
  5e572ffc
- Fix tests. · 7e8c833e
  JasperBoom authored 4 years ago
  
  7e8c833e
- Fix last set of tasks. · 4fbfe713
  JasperBoom authored 4 years ago
  
  4fbfe713
Jul 21, 2020
- Update output names for the first set of tasks. · c248c5bb
  JasperBoom authored 4 years ago
  
  c248c5bb
Jul 20, 2020
- Merge pull request #231 from biowdl/BIOWDL-484 · 795a285e
  Ruben Vorderman authored 4 years ago
  
  Update images
  Unverified
  
  795a285e
- Update changelog · 34163a93
  Ruben Vorderman authored 4 years ago
  
  34163a93
- Remove redundant newline. · 633c58b2
  Ruben Vorderman authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  633c58b2
- Add missing interpunction. · 9826e25a
  Ruben Vorderman authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  Unverified
  
  9826e25a
Jul 17, 2020
- update changelog · 156e9cc4
  Ruben Vorderman authored 4 years ago
  
  156e9cc4
- Merge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484 · 33f50aaf
  Ruben Vorderman authored 4 years ago
  
  33f50aaf
- Update images · fdf0e47f
  Ruben Vorderman authored 4 years ago
  
  fdf0e47f
- Merge branch 'BIOWDL-484' of https://github.com/biowdl/tasks into BIOWDL-484 · 22eef833
  Ruben Vorderman authored 4 years ago
  
  22eef833
- Update parameter_meta · 9c8b72b8
  Ruben Vorderman authored 4 years ago
  
  9c8b72b8
- Update task with newest features · 4b065c35
  Ruben Vorderman authored 4 years ago
  
  4b065c35
- Update default gatk image · 959bf985
  Ruben Vorderman authored 4 years ago
  
  959bf985
- fix view task · 631b5dfa
  Ruben Vorderman authored 4 years ago
  
  631b5dfa
- Overhaul view task · 86cd2038
  Ruben Vorderman authored 4 years ago
  
  86cd2038
- update docker image · 77b3d960
  Ruben Vorderman authored 4 years ago
  
  77b3d960
- update default images · 1308c181
  Ruben Vorderman authored 4 years ago
  
  1308c181
Jul 16, 2020
- Update picard container · 8845e4f5
  Ruben Vorderman authored 4 years ago
  
  8845e4f5
- update samtools image · 3e254fea
  Ruben Vorderman authored 4 years ago
  
  3e254fea
- update cutadapt container · 79faa7ca
  Ruben Vorderman authored 4 years ago
  
  79faa7ca
- Add parameter_meta · 4bfae066
  Ruben Vorderman authored 4 years ago
  
  4bfae066
Jul 15, 2020
- Merge pull request #230 from biowdl/SASC-1333 · 8c431e84
  Ruben Vorderman authored 4 years ago
  
  Better performance by using bam compression level 1 in star. Samtools controls to hisat.
  Unverified
  
  8c431e84
Jul 13, 2020
- Request less memory for htseq-count · 5e122542
  Ruben Vorderman authored 4 years ago
  
  5e122542
- Use more sort threads for alignment if more alignment threads are used · 3e7b0797
  Ruben Vorderman authored 4 years ago
  
  3e7b0797
- update changelog · ebba8927
  Ruben Vorderman authored 4 years ago
  
  ebba8927
- Merge pull request #228 from biowdl/usepicard · fdab6172
  Ruben Vorderman authored 4 years ago
  
  Use htsjdk inflaters and deflaters for markduplicates
  Unverified
  
  fdab6172
Jul 09, 2020
- Update changelog · 7f293e33
  Ruben Vorderman authored 4 years ago
  
  7f293e33
- Use htsjdk inflaters and deflaters for markduplicates · 8e3788d8
  Ruben Vorderman authored 4 years ago
  
  8e3788d8
Jul 07, 2020
- update changelog · d0207b7f
  Ruben Vorderman authored 4 years ago
  
  d0207b7f