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Commit ef2914cb authored by Ruben Vorderman's avatar Ruben Vorderman
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output file should not be optional

parent 5893adcc
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1 merge request!11Changes needed for the iterative assembly pipeline
...@@ -122,7 +122,7 @@ task view { ...@@ -122,7 +122,7 @@ task view {
String? preCommand String? preCommand
File inFile File inFile
File? referenceFasta File? referenceFasta
String? outputFileName String outputFileName
Boolean? outputBam Boolean? outputBam
Boolean? uncompressedBamOutput Boolean? uncompressedBamOutput
Int? includeFilter Int? includeFilter
...@@ -144,4 +144,8 @@ task view { ...@@ -144,4 +144,8 @@ task view {
${"--threads " + threads - 1} \ ${"--threads " + threads - 1} \
${inFile} ${inFile}
} }
output {
File outputFile = outputFileName
}
} }
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