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Commit eae8f2df authored by Ruben Vorderman's avatar Ruben Vorderman
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......@@ -131,6 +131,8 @@ task MergeBedFiles {
String outputBed = "merged.bed"
String dockerImage = "quay.io/biocontainers/bedtools:2.23.0--hdbcaa40_3"
}
# A sorted bed is needed for bedtools merge
command {
cat ~{sep=" " bedFiles} | bedtools sort | bedtools merge > ~{outputBed}
}
......
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