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Commit de43e51b authored by Ruben Vorderman's avatar Ruben Vorderman
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small fixes

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......@@ -32,7 +32,7 @@ task ApplyBQSR {
--static-quantized-quals 10 \
--static-quantized-quals 20 \
--static-quantized-quals 30 \
~{true="-L" false="" defined(sequenceGroupInterval)} ~{sep=" -L " select_first([sequenceGroupInterval], [])}
~{true="-L" false="" defined(sequenceGroupInterval)} ~{sep=" -L " select_first([sequenceGroupInterval, []])}
}
output {
......@@ -82,7 +82,7 @@ task BaseRecalibrator {
--use-original-qualities \
-O ~{recalibrationReportPath} \
--known-sites ~{sep=" --known-sites " knownIndelsSitesVCFsArg} \
~{true="-L" false="" defined(sequenceGroupInterval)} ~{sep=" -L " select_first([sequenceGroupInterval], [])}
~{true="-L" false="" defined(sequenceGroupInterval)} ~{sep=" -L " select_first([sequenceGroupInterval, []])}
}
output {
......
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